4PJO - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   MINIMAL U1 SNRNP

Authors :   Y. Kondo, C. Oubridge, A. M. Van Roon, K. Nagai

Date :   12 May 14 (Deposition) - 31 Dec 14 (Release) - 14 Jan 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.30

Chains :   Asym. Unit : A,B,C,D,E,F,G,K,L,M,N,O,P,Q,R,S,T,U,X,Y,a,b,c,d,e,f,g,k,l,m,n,o,p,q,r,s,t,u,x,y,1,2,3,4
Biol. Unit 1: A,B,C,D,E,F,G,K,L,X,1  (1x)
Biol. Unit 2: a,b,c,d,e,f,g,k,l,x,2  (1x)
Biol. Unit 3: M,N,O,P,Q,R,S,T,U,Y,3  (1x)
Biol. Unit 4: m,n,o,p,q,r,s,t,u,y,4  (1x)

Keywords :   U1 Snrnp, Spliceosome, Pre-Mrna Splicing, Ribonucleoprotein, Splicing (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Kondo, C. Oubridge, A. M. Van Roon, K. Nagai
Crystal Structure Of Human U1 Snrnp, A Small Nuclear Ribonucleoprotein Particle, Reveals The Mechanism Of 5' Splice Site Recognition.
Elife V. 4 2015
PubMed-ID: 25555158 | Reference-DOI: 10.7554/ELIFE.04986

Molecule 1 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3
	Chains	:	A, a, O, o
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PQE30
	Expression System Strain	:	SG13009 (PREP4)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	SNRPD3
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	SM-D3,SNRNP CORE PROTEIN D3

Molecule 2 - SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEINS B AND B'
	Chains	:	B, b, P, p
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PQE30
	Expression System Strain	:	SG13009 (PREP4)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	SNRPB, COD, SNRPB1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	SNRNP-B,SM PROTEIN B/B',SMB/B'

Molecule 3 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1
	Chains	:	C, c, Q, q
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21 (DE3)
	Expression System Plasmid	:	PET
	Expression System Strain	:	PLYSS
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	SNRPD1
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	EXPRESSED AS A FUSION PROTEIN WITH THE N-TERMINAL 59 RESIDUES OF U1-70K PROTEIN JOINED VIA A (GLY-SER)3 LINKER TO ITS N- TERMINUS. THIS FUSION PROTEIN IS CO-EXPRESSED WITH SMD2.
	Synonym	:	SM-D1,SM-D AUTOANTIGEN,SNRNP CORE PROTEIN D1

Molecule 4 - SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2
	Chains	:	D, d, R, r
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET
	Expression System Strain	:	PLYSS
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	SNRPD2
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	SM-D2,SNRNP CORE PROTEIN D2

Molecule 5 - SMALL NUCLEAR RIBONUCLEOPROTEIN E
	Chains	:	E, e, S, s
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET15B
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	SNRPE
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	SNRNP-E,SM PROTEIN E,SME

Molecule 6 - SMALL NUCLEAR RIBONUCLEOPROTEIN F
	Chains	:	F, f, T, t
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET15B
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	SNRPF, PBSCF
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	SNRNP-F,SM PROTEIN F,SMF

Molecule 7 - SMALL NUCLEAR RIBONUCLEOPROTEIN G
	Chains	:	G, g, U, u
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET15B
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	SNRPG, PBSCG
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	SNRNP-G,SM PROTEIN G,SMG

Molecule 8 - U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDA
	Chains	:	K, k, N, n
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET
	Expression System Strain	:	PLYSS
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	SNRNP70, RNPU1Z, RPU1, SNRP70, U1AP1
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	EXPRESSED AS A FUSION PROTEIN WITH SMD1 (1-85) JOINED VIA A (GLY-SER)3 LINKER AT ITS C-TERMINUS. THIS FUSION PROTEIN IS CO- EXPRESSED WITH SMD2. AN N-TERMINAL TAG IS CLEAVED BY TEV PROTEASE DURING PURIFICATION, LEAVING AN N-TERMINAL GLY RESIDUE.
	Synonym	:	SNRNP70

Molecule 9 - U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C
	Chains	:	L, l, M, m
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI B
	Expression System Plasmid	:	PET3B
	Expression System Strain	:	B834 (DE3)
	Expression System Taxid	:	37762
	Expression System Vector Type	:	PLASMID
	Gene	:	SNRPC
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	U1C

Molecule 10 - U1 RNA VARIANT (48-MER) WITH 4-HELIX JUNCTION REPLACED BY KISSING LOOP (HIV-1 (MAL) DIS) AND SHORTER STEM-LOOP 4.
	Chains	:	1, 2, 3, 4
	Engineered	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	MADE BY IN VITRO TRANSCRIPTION USING T7 RNA POLYMERASE FROM A LINEARISED PUC PLASMID TEMPLATE CONTAINING A T7 PROMOTER FOLLOWED BY THE TEMPLATE SEQUENCE.
	Synthetic	:	YES

*Molecule 11 - RNA (5'-R(APGPGPUPAPAPGPUPCPC)-3')*
	Chains	:	X, x, Y, y
	Engineered	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	RNA MADE BY CHEMICAL SYNTHESIS. SEQUENCE BASED ON CONSENSUS HUMAN 5' SPLICE SITE.
	Synthetic	:	YES

		1	2	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44
Asymmetric Unit	:	A	B	C	D	E	F	G	K	L	M	N	O	P	Q	R	S	T	U	X	Y	a	b	c	d	e	f	g	k	l	m	n	o	p	q	r	s	t	u	x	y	1	2	3	4
Biological Unit 1 (1x)	:	A	B	C	D	E	F	G	K	L										X																						1
Biological Unit 2 (1x)	:																					a	b	c	d	e	f	g	k	l										x			2
Biological Unit 3 (1x)	:										M	N	O	P	Q	R	S	T	U		Y																							3
Biological Unit 4 (1x)	:																														m	n	o	p	q	r	s	t	u		y				4

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (8, 39)

No.	Name	Count	Type	Full Name
1	CL	1	Ligand/Ion	CHLORIDE ION
2	EOH	1	Ligand/Ion	ETHANOL
3	EPE	2	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4	GTP	4	Mod. Nucleotide	GUANOSINE-5'-TRIPHOSPHATE
5	K	6	Ligand/Ion	POTASSIUM ION
6	MG	20	Ligand/Ion	MAGNESIUM ION
7	SO4	1	Ligand/Ion	SULFATE ION
8	ZN	4	Ligand/Ion	ZINC ION

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EOH	-1	Ligand/Ion	ETHANOL
3	EPE	1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4	GTP	1	Mod. Nucleotide	GUANOSINE-5'-TRIPHOSPHATE
5	K	-1	Ligand/Ion	POTASSIUM ION
6	MG	-1	Ligand/Ion	MAGNESIUM ION
7	SO4	-1	Ligand/Ion	SULFATE ION
8	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EOH	-1	Ligand/Ion	ETHANOL
3	EPE	1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4	GTP	1	Mod. Nucleotide	GUANOSINE-5'-TRIPHOSPHATE
5	K	-1	Ligand/Ion	POTASSIUM ION
6	MG	-1	Ligand/Ion	MAGNESIUM ION
7	SO4	-1	Ligand/Ion	SULFATE ION
8	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EOH	-1	Ligand/Ion	ETHANOL
3	EPE	-1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4	GTP	1	Mod. Nucleotide	GUANOSINE-5'-TRIPHOSPHATE
5	K	-1	Ligand/Ion	POTASSIUM ION
6	MG	-1	Ligand/Ion	MAGNESIUM ION
7	SO4	-1	Ligand/Ion	SULFATE ION
8	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 4 (3, 3)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EOH	1	Ligand/Ion	ETHANOL
3	EPE	-1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4	GTP	1	Mod. Nucleotide	GUANOSINE-5'-TRIPHOSPHATE
5	K	-1	Ligand/Ion	POTASSIUM ION
6	MG	-1	Ligand/Ion	MAGNESIUM ION
7	SO4	1	Ligand/Ion	SULFATE ION
8	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (31, 31)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	CYS L:6 , CYS L:9 , HIS L:24 , HIS L:30	binding site for residue ZN L 201
02	AC2	SOFTWARE	G 1:11 , G 1:12 , C 1:13 , C 1:25 , A 1:26 , HIS L:15	binding site for residue EPE 1 201
03	AC3	SOFTWARE	G 1:130 , MG 1:203 , MG 1:207	binding site for residue MG 1 202
04	AC4	SOFTWARE	G 1:132 , MG 1:202 , MG 1:206 , MG 1:207	binding site for residue MG 1 203
05	AC5	SOFTWARE	A 1:126 , MG 1:206	binding site for residue MG 1 204
06	AC6	SOFTWARE	U 1:131 , MG 1:203 , MG 1:204	binding site for residue MG 1 206
07	AC7	SOFTWARE	U 1:128 , MG 1:202 , MG 1:203	binding site for residue MG 1 207
08	AC8	SOFTWARE	G 1:130 , GLU B:75	binding site for residue MG 1 208
09	AC9	SOFTWARE	A 1:18 , G 1:19	binding site for residue MG 1 209
10	AD1	SOFTWARE	U 1:124	binding site for residue K 1 210
11	AD2	SOFTWARE	GLU b:62	binding site for residue K b 101
12	AD3	SOFTWARE	GLN b:22	binding site for residue K b 102
13	AD4	SOFTWARE	CYS l:6 , CYS l:9 , HIS l:24 , HIS l:30	binding site for residue ZN l 201
14	AD5	SOFTWARE	GLU l:32 , ASN l:33 , ASP l:36	binding site for residue MG l 202
15	AD6	SOFTWARE	G 2:11 , C 2:13 , A 2:26 , C 2:27 , HIS l:15	binding site for residue EPE 2 201
16	AD7	SOFTWARE	U 1:21	binding site for residue MG 2 203
17	AD8	SOFTWARE	G 2:15	binding site for residue MG 2 204
18	AD9	SOFTWARE	U 2:124	binding site for residue MG 2 205
19	AE1	SOFTWARE	SER Q:73 , THR n:58	binding site for residue K Q 101
20	AE2	SOFTWARE	CYS M:6 , CYS M:9 , HIS M:24 , HIS M:30	binding site for residue ZN M 201
21	AE3	SOFTWARE	A 3:126 , U 3:127	binding site for residue MG 3 201
22	AE4	SOFTWARE	A 3:18 , G 3:19	binding site for residue MG 3 204
23	AE5	SOFTWARE	CYS m:6 , CYS m:9 , HIS m:24 , HIS m:30	binding site for residue ZN m 201
24	AE6	SOFTWARE	A 4:28 , C 4:29	binding site for residue EOH 4 201
25	AE7	SOFTWARE	A 4:135 , U 4:137 , HIS n:34 , GLN n:36	binding site for residue CL 4 203
26	AE8	SOFTWARE	GTP 2:1 , C y:10 , SO4 y:103	binding site for residue MG y 101
27	AE9	SOFTWARE	HIS m:24 , GLY m:27 , HIS m:30 , U y:4	binding site for residue MG y 102
28	AF1	SOFTWARE	GTP 2:1 , ASN l:33 , MG y:101	binding site for residue SO4 y 103
29	AF2	SOFTWARE	A 2:3 , GTP 4:1 , LYS l:29 , GLU l:32 , C x:9 , C x:10 , C y:10 , MG y:101 , SO4 y:103	binding site for Di-nucleotide GTP 2 1 and G 2 2
30	AF3	SOFTWARE	GTP 1:1 , A 3:3 , HOH 3:301 , LYS M:29 , GLU M:32 , C X:10 , C Y:9 , C Y:10	binding site for Di-nucleotide GTP 3 1 and G 3 2
31	AF4	SOFTWARE	GTP 2:1 , A 4:3 , C x:10 , C y:9 , C y:10	binding site for Di-nucleotide GTP 4 1 and G 4 2

(no "SS Bond" information available for 4PJO)

(no "Cis Peptide Bond" information available for 4PJO)

(no "SAP(SNP)/Variant" information available for 4PJO)

(no "PROSITE Motif" information available for 4PJO)

(no "Exon" information available for 4PJO)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain 1 from PDB  Type:RNA  Length:48
                                                                                
                 4pjo 1   1 xGACUUACCUGGCAGUGAGGUGCACACACUGCAUAAUUUGUGGUAGUG 138
                            |       10        20        30||     130        
                            1-GTP                        31|                
                                                         122

Chain 2 from PDB  Type:RNA  Length:48
                                                                                
                 4pjo 2   1 xGACUUACCUGGCAGUGAGGUGCACACACUGCAUAAUUUGUGGUAGUG 138
                            |       10        20        30||     130        
                            1-GTP                        31|                
                                                         122

Chain 3 from PDB  Type:RNA  Length:47
                                                                               
                 4pjo 3   1 xGACUUACCUGGCAGUGAGGUGCACACACUGCAUAAUUUGUGGUAGU 137
                            |       10        20        30||     130       
                            1-GTP                        31|               
                                                         122

Chain 4 from PDB  Type:RNA  Length:49
                                                                                 
                 4pjo 4   1 xGACUUACCUGGCAGUGAGGUGCACACACUGCAUAAUUUGUGGUAGUGG 139
                            |       10        20        30||     130         
                            1-GTP                        31|                 
                                                         122

Chain A from PDB  Type:PROTEIN  Length:84
                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhh...eeeeee....eeeeeeeee.....eeeeeeeee.....eeeeeeeee....eeeeeehhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------ Transcript
                 4pjo A   1 MSIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLK  84
                                    10        20        30        40        50        60        70        80

Chain B from PDB  Type:PROTEIN  Length:83
                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh....eeeeee....eeeeeeeee.....eeeeeeeee.ee.........ee..eeeeeeee....eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------- Transcript
                 4pjo B   6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPK  88
                                    15        25        35        45        55        65        75        85

Chain C from PDB  Type:PROTEIN  Length:86
                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhh....eeeeee....eeeeeeeee.....eeeeeeeee......eeeeeeee....eeeee.....hhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                 4pjo C  -3 GSGSVKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVD  82
                                     6        16        26        36        46        56        66        76

Chain D from PDB  Type:PROTEIN  Length:98
                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh.hhhhhhhhhh..eeeeee....eeeeeeeee.....eeeeeeeeeeee....eeeeeeeeeeee....eeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------- Transcript
                 4pjo D  10 EMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVSKPVNKDRYISKMFLRGDSVIVVLRNPLIA 116
                                    19        29        39        49        59        69       |88        98       108        
                                                                                              77|                             
                                                                                               87

Chain E from PDB  Type:PROTEIN  Length:77
                                                                                                             
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh.eeeeee.....eeeeeeeeee.....eeeeeeeeee.....eeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                 4pjo E  14 MVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV  90
                                    23        33        43        53        63        73        83

Chain F from PDB  Type:PROTEIN  Length:73
                                                                                                         
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh..eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 4pjo F   3 LPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV  75
                                    12        22        32        42        52        62        72

Chain G from PDB  Type:PROTEIN  Length:74
                                                                                                          
               SCOP domains -------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeee....eeeeeeeee.....eeeeeee.........ee..eee....eeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------- Transcript
                 4pjo G   3 KAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV  76
                                    12        22        32        42        52        62        72

Chain K from PDB  Type:PROTEIN  Length:58
                                                                                          
               SCOP domains ---------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh................hhhhh........hhhhhhhh.hhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------- Transcript
                 4pjo K   2 TQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTR  59
                                    11        21        31        41        51

Chain L from PDB  Type:PROTEIN  Length:53
                                                                                     
               SCOP domains ----------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....eee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                 4pjo L   2 PKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTT  54
                                    11        21        31        41        51

Chain M from PDB  Type:PROTEIN  Length:53
                                                                                     
               SCOP domains ----------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....eee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                 4pjo M   2 PKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTT  54
                                    11        21        31        41        51

Chain N from PDB  Type:PROTEIN  Length:53
                                                                                     
               SCOP domains ----------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh................hhhhh........hhhhhhhh.hhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                 4pjo N   6 PPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPT  58
                                    15        25        35        45        55

Chain O from PDB  Type:PROTEIN  Length:82
                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh...eeeeee....eeeeeeeee.....eeeeeeeee.....eeeeeeeee....eeeeeehhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                 4pjo O   2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPML  83
                                    11        21        31        41        51        61        71        81

Chain P from PDB  Type:PROTEIN  Length:83
                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh....eeeeee....eeeeeeeee.....eeeeeeeee.ee.........ee..eeeeeeee....eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------- Transcript
                 4pjo P   6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPK  88
                                    15        25        35        45        55        65        75        85

Chain Q from PDB  Type:PROTEIN  Length:85
                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh....eeeeee....eeeeeeeee.....eeeeeeeee......eeeeeeee....eeeee.....hhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------- Transcript
                 4pjo Q  -2 SGSVKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVD  82
                                     7        17        27        37        47        57        67        77

Chain R from PDB  Type:PROTEIN  Length:96
                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhhhhh.hhhhhhhhhhh.eeeeee....eeeeeeeee.....eeeeeeeeeeee..eeeeeeeeeeee....eeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 4pjo R  10 EMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPVNKDRYISKMFLRGDSVIVVLRNPLIA 116
                                    19        29        39        49        59        69       |90       100       110      
                                                                                              77|                           
                                                                                               89

Chain S from PDB  Type:PROTEIN  Length:77
                                                                                                             
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh.eeeeee.....eeeeeeeeee.....eeeeeeeeee.....eee...eee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                 4pjo S  14 MVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV  90
                                    23        33        43        53        63        73        83

Chain T from PDB  Type:PROTEIN  Length:74
                                                                                                          
               SCOP domains -------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhh..eeeeee....eeeeeeeee.....eeeeeeeeee..eeeee...eee....eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------- Transcript
                 4pjo T   2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV  75
                                    11        21        31        41        51        61        71

Chain U from PDB  Type:PROTEIN  Length:71
                                                                                                       
               SCOP domains ----------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeee....eeeeeeeee.....eeeeeee.......eeeeeee....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                 4pjo U   4 AHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATQQNNIGMVVIRGNSIIMLEALERV  76
                                    13        23        33        43      ||55        65        75 
                                                                         50|                       
                                                                          53

Chain X from PDB  Type:RNA  Length:10
                                          
                 4pjo X   1 AGGUAAGUCC  10
                                    10

Chain Y from PDB  Type:RNA  Length:10
                                          
                 4pjo Y   1 AGGUAAGUCC  10
                                    10

Chain a from PDB  Type:PROTEIN  Length:83
                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh...eeeeee....eeeeeeeee.....eeeeeeeee.....eeeeeeeee....eeeeeehhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------- Transcript
                 4pjo a   2 SIGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPMLK  84
                                    11        21        31        41        51        61        71        81

Chain b from PDB  Type:PROTEIN  Length:78
                                                                                                              
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhh....eeeeee....eeeeeeeee.....eeeeeeeee.ee...ee..eeeeeeee....eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                 4pjo b   6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPEREEKRVLGLVLLRGENLVSMTVEGPPPKD  89
                                    15        25        35        45       |61        71        81        
                                                                          53|                             
                                                                           60

Chain c from PDB  Type:PROTEIN  Length:87
                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhh....eeeeee....eeeeeeeee.....eee..eeee......eee..eee....eeeee.....hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 4pjo c  -3 GSGSVKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDV  83
                                     6        16        26        36        46        56        66        76

Chain d from PDB  Type:PROTEIN  Length:92
                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh.hhhhhhhhhhh.eeeeee....eeeeeeeee.....eeeeeeeeeeee...eeeeeeeeeeee....eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                 4pjo d  13 PEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVKPVNKDRYISKMFLRGDSVIVVLRNPL 114
                                    22        32        42        52        62        72    ||  92       102       112  
                                                                                           77|                          
                                                                                            88

Chain e from PDB  Type:PROTEIN  Length:77
                                                                                                             
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh..eeeeee.....eeeeeeeeee.....eeeeeeeeee.....eeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                 4pjo e  14 MVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV  90
                                    23        33        43        53        63        73        83

Chain f from PDB  Type:PROTEIN  Length:74
                                                                                                          
               SCOP domains -------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhh..eeeeee....eeeeeeeee.....eeeeeeeeee..eeeeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------- Transcript
                 4pjo f   2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV  75
                                    11        21        31        41        51        61        71

Chain g from PDB  Type:PROTEIN  Length:73
                                                                                                         
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeee....eeeeeeeee.....eeeeeee.........eeeeeee....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 4pjo g   4 AHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV  76
                                    13        23        33        43        53        63        73

Chain k from PDB  Type:PROTEIN  Length:57
                                                                                         
               SCOP domains --------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh................hhhhh........hhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------- Transcript
                 4pjo k   3 QFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTR  59
                                    12        22        32        42        52

Chain l from PDB  Type:PROTEIN  Length:53
                                                                                     
               SCOP domains ----------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....eee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------- Transcript
                 4pjo l   2 PKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTT  54
                                    11        21        31        41        51

Chain m from PDB  Type:PROTEIN  Length:50
                                                                                  
               SCOP domains -------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author ..eee....eee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                 4pjo m   2 PKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLID  51
                                    11        21        31        41        51

Chain n from PDB  Type:PROTEIN  Length:58
                                                                                          
               SCOP domains ---------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh................hhhhh........hhhhh...hhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------- Transcript
                 4pjo n   2 TQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTR  59
                                    11        21        31        41        51

Chain o from PDB  Type:PROTEIN  Length:81
                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh...eeeeee....eeeeeeeee.....eeeeeeeee.....eeeeeeeee....eeeeeehhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 4pjo o   3 IGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPML  83
                                    12        22        32        42        52        62        72        82

Chain p from PDB  Type:PROTEIN  Length:86
                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh....eeeeee....eeeeeeeee.....eeeeeeeee.ee.........ee..eeeeeeee....eeeeeeee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                 4pjo p   6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG  91
                                    15        25        35        45        55        65        75        85

Chain q from PDB  Type:PROTEIN  Length:87
                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhh....eeeeee....eeeeeeeee.....eeeeeeeee......eeeeeeee....eeeee.....hhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 4pjo q  -4 SGSGSVKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVD  82
                                     5        15        25        35        45        55        65        75

Chain r from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhh.hhhhhhhhhhh.eeeeee....eeeeeeeee.....eeeeeeeeeeee...eeeeeeeeeeee....eeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 4pjo r  10 EMTPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVKPVNKDRYISKMFLRGDSVIVVLRNPL 114
                                    19        29        39        49        59        69       |89        99       109     
                                                                                              77|                          
                                                                                               88

Chain s from PDB  Type:PROTEIN  Length:77
                                                                                                             
               SCOP domains ----------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh.eeeeee.....eeeeeeeeee.....eeeeeeeeee.....eeeeeeeee....eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                 4pjo s  14 MVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV  90
                                    23        33        43        53        63        73        83

Chain t from PDB  Type:PROTEIN  Length:74
                                                                                                          
               SCOP domains -------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhh..eeeeee....eeeeeeeee.....eeeeeeeeee..eeeee...eee....eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------- Transcript
                 4pjo t   2 SLPLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGV  75
                                    11        21        31        41        51        61        71

Chain u from PDB  Type:PROTEIN  Length:73
                                                                                                         
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeeee....eeeeeeeee.....eeeeeee.........eeeeeeehhh.eeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 4pjo u   4 AHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV  76
                                    13        23        33        43        53        63        73

Chain x from PDB  Type:RNA  Length:10
                                          
                 4pjo x   1 AGGUAAGUCC  10
                                    10

Chain y from PDB  Type:RNA  Length:10
                                          
                 4pjo y   1 AGGUAAGUCC  10
                                    10

Legend:		→ Mismatch	(orange background)
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		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4PJO)

(no "CATH Domain" information available for 4PJO)

(no "Pfam Domain" information available for 4PJO)

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		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	RUXF_HUMAN \| P62306
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	RUXG_HUMAN \| P62308
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	SMD1_HUMAN \| P62314
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	SMD2_HUMAN \| P62316
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	SMD3_HUMAN \| P62318
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	RSMB_HUMAN \| P14678	:	1d3b 3cw1 3jcr 3pgw 4wzj 5mqf
	RU17_HUMAN \| P08621	:	2l5i 2l5j 3cw1 3pgw 4pkd
	RU1C_HUMAN \| P09234	:	2vrd 3cw1
	RUXE_HUMAN \| P62304	:	3cw1 3jcr 3pgw 3s6n 4f7u 4v98 4wzj 5mqf
	RUXF_HUMAN \| P62306	:	3cw1 3jcr 3pgw 3s6n 4f7u 4v98 4wzj 5mqf
	RUXG_HUMAN \| P62308	:	3cw1 3jcr 3pgw 3s6n 4f7u 4v98 4wzj 5mqf
	SMD1_HUMAN \| P62314	:	1b34 3cw1 3jcr 3pgw 3s6n 4f7u 4v98 4wzj 5mqf
	SMD2_HUMAN \| P62316	:	1b34 3cw1 3jcr 3pgw 3s6n 4f7u 4v98 4wzj 5mqf
	SMD3_HUMAN \| P62318	:	1d3b 3cw1 3jcr 3pgw 3vri 4wzj 5mqf

2y9a	U4 SNRNP CORE STRUCTURE
3cw1	U1 SNRNP STRUCTURE AT 5.5 ANGSTROM RESOLUTION

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (8, 39)

Sites (31, 31)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (65, 266)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File