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(-) Description

Title :  DICTY MYOSIN II R238E.E459R MUTANT (WITH ADP.PI) IN THE PI RELEASE STATE
 
Authors :  T. Isabet, H. Benisty, P. Llinas, H. L. Sweeney, A. Houdusse
Date :  12 May 14  (Deposition) - 29 Apr 15  (Release) - 30 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A
Keywords :  Motor Domain Mutant, Motor Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Llinas, T. Isabet, L. Song, V. Ropars, B. Zong, H. Benisty, S. Sirigu C. Morris, C. Kikuti, D. Safer, H. L. Sweeney, A. Houdusse
How Actin Initiates The Motor Activity Of Myosin.
Dev. Cell V. 33 401 2015
PubMed-ID: 25936506  |  Reference-DOI: 10.1016/J.DEVCEL.2015.03.025

(-) Compounds

Molecule 1 - MYOSIN-2 HEAVY CHAIN
    Chains: A
    EC Number: 3.6.4.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector Type: BACULOVIRUS
    Gene: MHCA, DDB_G0286355
    Mutation: YES
    Organism Common: SLIME MOLD
    Organism Scientific: DICTYOSTELIUM DISCOIDEUM
    Organism Taxid: 44689
    Synonym: MYOSIN II HEAVY CHAIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric/Biological Unit (4, 11)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2GOL7Ligand/IonGLYCEROL
3MG1Ligand/IonMAGNESIUM ION
4PO42Ligand/IonPHOSPHATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:186 , SER A:237 , ADP A:802 , HOH A:957 , HOH A:958 , HOH A:959binding site for residue MG A 801
02AC2SOFTWAREASN A:127 , PRO A:128 , PHE A:129 , LYS A:130 , TYR A:135 , GLU A:180 , GLY A:182 , ALA A:183 , GLY A:184 , LYS A:185 , THR A:186 , GLU A:187 , ASN A:233 , MG A:801 , PO4 A:803 , HOH A:957 , HOH A:958 , HOH A:959 , HOH A:960 , HOH A:972 , HOH A:1014 , HOH A:1182 , HOH A:1246binding site for residue ADP A 802
03AC3SOFTWAREGLU A:180 , SER A:181 , LYS A:185 , SER A:237 , SER A:456 , GLY A:457 , ARG A:459 , ADP A:802 , HOH A:959 , HOH A:978binding site for residue PO4 A 803
04AC4SOFTWAREGLU A:180 , ASN A:660 , VAL A:671 , ASP A:674 , GLN A:675 , GOL A:805 , HOH A:1162binding site for residue PO4 A 804
05AC5SOFTWAREGLU A:180 , TYR A:573 , GLN A:675 , ASN A:679 , PO4 A:804 , HOH A:991 , HOH A:1085 , HOH A:1142 , HOH A:1162binding site for residue GOL A 805
06AC6SOFTWARELYS A:265 , LYS A:423 , ALA A:424 , LEU A:431 , HOH A:1034 , HOH A:1232 , HOH A:1233binding site for residue GOL A 806
07AC7SOFTWAREILE A:35 , TRP A:36 , TYR A:37 , ASN A:38 , TYR A:47 , ASP A:76 , ASN A:78 , HOH A:1169binding site for residue GOL A 807
08AC8SOFTWARELYS A:16 , GLU A:89 , ASN A:149 , VAL A:151 , ALA A:152 , HOH A:1279binding site for residue GOL A 808
09AC9SOFTWARELYS A:42 , SER A:549 , HIS A:550 , LYS A:554binding site for residue GOL A 809
10AD1SOFTWAREPRO A:220 , GLU A:223 , ALA A:224 , ASN A:235 , HIS A:279 , HOH A:1163binding site for residue GOL A 810
11AD2SOFTWAREGLN A:19 , GLY A:20 , PHE A:25 , ARG A:397 , ILE A:398 , LEU A:399 , GLN A:594 , HOH A:1133binding site for residue GOL A 811

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PJK)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gln A:521 -Pro A:522

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PJK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PJK)

(-) Exons   (0, 0)

(no "Exon" information available for 4PJK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:713
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhh....hhhhhhhhh....eeee..........eeeeeeee...eeeee.....eeeee....ee..hhhhh...hhhhh...hhhhhhhhhhhhhhh...eeee..eeeee.........hhhhhhhhh..hhhhh..hhhhhhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhee.......ee..eeeeeeee.....eeeeeeeee..hhhhhh........hhhhhhhhhhhhhhhhhhh...hhhhh..............hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...ee.....ee...hhhhhhhhhhhh.hhhhhhhhhhh.eeee..eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhh....hhhhhhhhhhh....hhhhhhhhhhhhhh.....ee.......eeeeee..eeeeee..hhhhhhhh..hhhhhhhhhh..hhhhhhhhhhhhhhh..ee..ee.hhhhhhhhhhhhhhhhhhh.eeeeeeee...........hhhhhhhhhhhhhhhhhhhhhhhh..eeehhhhh.......eee....eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pjk A   1 MNPIHDRTSDYHKYLKVKQGDSDLFKLTVSDKRYIWYNPDPKERDSYECGEIVSETSDSFTFKTVDGQDRQVKKDDANQRNPIKFDGVEDMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKRIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQFNSAGFISGASIQSYLLEKSRVVFQSETERNYHIFYQLLAGATAEEKKALHLAGPESFNYLNQSGCVDIKGVSDSEEFKITRQAMDIVGFSQEEQMSIFKIIAGILHLGNIKFEKGAGEGAVLKDKTALNAASTVFGVNPSVLEKALMEPRILAGRDLVAQHLNVEKSSSSRDALVKALYGRLFLWLVKKINNVLCQERKAYFIGVLDISGFRIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDPLQQDLELCFKDSSDNVVTKLFNDPNIASRAKKGANFITVAAQYKEQLASLMATLETTNPHFVRCIIPNNKQLPAKLEDKVVLDQLRCNGVLEGIRITRKGFPNRIIYADFATDAVEQYRFGITKIFFR 747
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200 ||    216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696    || 726|      744   
                                                                                                                                                                                                                                   202|                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         701| 726|            
                                                                                                                                                                                                                                    209                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          722  735
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PJK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PJK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PJK)

(-) Gene Ontology  (51, 51)

Asymmetric/Biological Unit(hide GO term definitions)

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        MYS2_DICDI | P08799: 1d0x 1d0y 1d0z 1d1a 1d1b 1d1c 1fmv 1fmw 1g8x 1jwy 1jx2 1lvk 1mma 1mmd 1mmg 1mmn 1mnd 1mne 1q5g 1vom 1w9i 1w9j 1w9k 1w9l 1yv3 2aka 2jhr 2jj9 2x9h 2xel 2xo8 2y0r 2y8i 2y9e 3bz7 3bz8 3bz9 3mjx 3mkd 3mnq 3myh 3myk 3myl 4ae3

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