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(-) Description

Title :  CRYSTAL STRUCTURE OF S. AUREUS AUTOLYSIN E IN COMPLEX WITH MUROPEPTIDE NAM-L-ALA-D-IGLU
 
Authors :  M. Mihelic, M. Renko, D. Turk
Date :  08 May 14  (Deposition) - 14 Oct 15  (Release) - 08 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.48
Chains :  Asym./Biol. Unit :  A
Keywords :  Autolysin, Glycosidase, Peptidoglycan, Muropeptide, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Mihelic, K. Vlahovicek-Kahlina, M. Renko, S. Mesnage, A. Dobersek A. Taler-Vercic, A. Jakas, D. Turk
The Mechanism Behind The Selection Of Two Different Cleavag Sites In Nag-Nam Polymers
Iucrj V. 4 185 2017
PubMed: search  |  Reference-DOI: 10.1107/S2052252517000367

(-) Compounds

Molecule 1 - AUTOLYSIN E
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 35-258
    Gene: SAV2307
    Organism Scientific: STAPHYLOCOCCUS AUREUS (STRAIN MU50 / ATCC 700699)
    Organism Taxid: 158878
    Strain: MU50 / ATCC 700699

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 11)

Asymmetric/Biological Unit (3, 11)
No.NameCountTypeFull Name
13LT1Ligand/Ion(4R)-4-[[(2S)-2-[[(2R)-2-[(2R,3S,4R,5R,6R)-5-ACETAMIDO-2-(HYDROXYMETHYL)-3,6-BIS(OXIDANYL)OXAN-4-YL]OXYPROPANOYL]AMINO]PROPANOYL]AMINO]-5-AZANYL-5-OXIDANYLIDENE-PENTANOIC ACID
2CL7Ligand/IonCHLORIDE ION
3SO43Ligand/IonSULFATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:225 , SER A:226 , ASP A:227 , 3LT A:311 , HOH A:421 , HOH A:450 , HOH A:549binding site for residue SO4 A 301
02AC2SOFTWARELYS A:115 , LYS A:236 , LYS A:258 , HOH A:495binding site for residue SO4 A 302
03AC3SOFTWAREILE A:252 , ARG A:253 , GLN A:254 , THR A:255binding site for residue SO4 A 303
04AC4SOFTWAREILE A:252binding site for residue CL A 304
05AC5SOFTWAREGLY A:106 , GLY A:108 , LYS A:143 , LYS A:243 , HOH A:632 , HOH A:633binding site for residue CL A 305
06AC6SOFTWARESER A:96 , SER A:98 , ASN A:218 , HOH A:419binding site for residue CL A 306
07AC7SOFTWAREVAL A:54 , HOH A:554binding site for residue CL A 307
08AC8SOFTWAREALA A:74 , LYS A:85 , TRP A:214binding site for residue CL A 308
09AC9SOFTWARETYR A:256 , TYR A:257 , HOH A:550binding site for residue CL A 309
10AD1SOFTWAREHIS A:134 , GLU A:138 , PHE A:161 , TYR A:224 , TRP A:230binding site for residue CL A 310
11AD2SOFTWAREGLY A:162 , ILE A:163 , GLY A:164 , PHE A:196 , TYR A:201 , GLN A:223 , TYR A:224 , SO4 A:301 , HOH A:402 , HOH A:418 , HOH A:466binding site for residue 3LT A 311

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PI9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PI9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PI9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PI9)

(-) Exons   (0, 0)

(no "Exon" information available for 4PI9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:222
                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhhhh......eeee..eeee.hhhhhhhhhh..hhhhh........hhhhhhhhhh.hhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhh....hhhhheee..eee.........hhhhhhhh.hhhhhh...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.............hhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4pi9 A  33 AANDVNYSFDEAVSMQQGKGIVQTKEEDGKFVEANNNEIAKAMTISDMKYMDITEKVPMSESEVNQLLKGKGILENRGKVFLEAQEKYEVNVIYLVSHALVETGNGKSELAKGIKDGKKRYYNFFGIGAFDSSAVRSGKSYAEKEQWTSPDKAIIGGAKFIRNEYFENNQLNLYQMRWNPENPAQHQYASDIRWADKIAKLMDKSYKQFGIKKDDIRQTYYK 258
                                    42        52        62        72     || 86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256  
                                                                        78|                                                                                                                                                                               
                                                                         83
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PI9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PI9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PI9)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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        A0A0H3JT72_S | A0A0H3JT72: 4pi7 4pi8 4pia

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