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(-) Description

Title :  CRYSTAL STRUCTURE OF AGGA, THE MAJOR SUBUNIT OF AGGREGATIVE ADHERENCE FIMBRIAE TYPE I (AAF/I) FROM THE ESCHERICHIA COLI O4H104
 
Authors :  N. A. Pakharukova, M. Tuitilla, A. V. Zavialov
Date :  05 May 14  (Deposition) - 01 Oct 14  (Release) - 11 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Cell Adhesion, Beta Sandwich, Donor-Strand Complementation, Fibronectin Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. A. Berry, Y. Yang, N. Pakharukova, J. A. Garnett, W. C. Lee, E. Cota, J. Marchant, S. Roy, M. Tuittila, B. Liu, K. G. Inman, F. Ruiz-Perez, I. Mandomando, J. P. Nataro, A. V. Zavialov, S. Matthews
Structural Insight Into Host Recognition By Aggregative Adherence Fimbriae Of Enteroaggregative Escherichia Coli.
Plos Pathog. V. 10 04404 2014
PubMed-ID: 25232738  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1004404
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - AGGREGATIVE ADHERENCE FIMBRIAL SUBUNIT AGGA
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET101D
    Expression System Strain: BL21-AI
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 41-167
    Gene: EUAG_05069
    Organism Taxid: 1048254
    Synonym: AGGREGATIVE ADHERENCE FIMBRIAE, TYPE I (AAF/I), MAJOR SUBUNIT, AGGA, SHIGA-TOXIN PRODUCING E.COLI

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:152 , HOH A:322 , HOH A:378 , HIS B:7 , HIS B:8 , HOH B:324binding site for residue GOL A 201
2AC2SOFTWARETRP B:54 , LYS B:96 , ASP B:135 , HOH B:347binding site for residue GOL B 201

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:14 -A:46
2B:14 -B:46

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PH8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PH8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PH8)

(-) Exons   (0, 0)

(no "Exon" information available for 4PH8)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........eeee...eee.......eeeeeeee.hhhhhhhh.eeeee..hhhhheeeee......eeee..ee....ee.hhhh...eeee.......eeeeeee.........eeeeeeeeeeeeeee..eeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ph8 A   7 HHHVTNDCPVTITTTPPQTVGVSSTTPIGFSAKVTTSDQCIKAGAKVWLWGTGPANKWVLQHAKVAKQKYTLNPSIDGGADFVNQGTDAKIYKKLTSGNKFLNASVSVNPKTQVLIPGEYTMILHAAVDFDNKQGGASQQTTQTIRLTVT 156
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156


Chain B from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........eeee...eee.......eeeeeeee.hhhhhhh..eeeeee.hhhhheeeee......eeee..eee...ee.hhhh...eeee.......eeeeeeehhhhhh...eeeeeeeeeeeeeee..eeeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ph8 B   7 HHHVTNDCPVTITTTPPQTVGVSSTTPIGFSAKVTTSDQCIKAGAKVWLWGTGPANKWVLQHAKVAKQKYTLNPSIDGGADFVNQGTDAKIYKKLTSGNKFLNASVSVNPKTQVLIPGEYTMILHAAVDFDNKQGGASQQTTQTIRLTVT 156
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PH8)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PH8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PH8)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4PH8)

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4or1