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(-) Description

Title :  STRUCTURE OF OSH6P IN COMPLEX WITH PHOSPHATIDYLINOSITOL 4-PHOSPHATE
 
Authors :  V. Delfosse, J. Moser Von Filseck, B. Antonny, W. Bourguet, G. Drin
Date :  05 May 14  (Deposition) - 29 Jul 15  (Release) - 05 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.55
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Transport Protein, Osh Proteins Phosphatidylinositol Phosphate Lipid Transport, Lipid Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Moser Von Filseck, A. Copic, V. Delfosse, S. Vanni, C. L. Jackson, W. Bourguet, G. Drin
Intracellular Transport. Phosphatidylserine Transport By Orp/Osh Proteins Is Driven By Phosphatidylinositol 4-Phosphate.
Science V. 349 432 2015
PubMed-ID: 26206936  |  Reference-DOI: 10.1126/SCIENCE.AAB1346

(-) Compounds

Molecule 1 - OXYSTEROL-BINDING PROTEIN HOMOLOG 6
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PGEX-4T-3
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: OSH6, YKR003W, YK102
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A   
Biological Unit 2 (1x):  B  
Biological Unit 3 (1x):   C 
Biological Unit 4 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
12Y54Ligand/Ion(2R)-1-{[(R)-HYDROXY{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-TETRAHYDROXY-4-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}-3-(OCTADECANOYLOXY)PROPAN-2-YL (5Z,8Z,11Z,14Z)-ICOSA-5,8,11,14-TETRAENOATE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
12Y51Ligand/Ion(2R)-1-{[(R)-HYDROXY{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-TETRAHYDROXY-4-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}-3-(OCTADECANOYLOXY)PROPAN-2-YL (5Z,8Z,11Z,14Z)-ICOSA-5,8,11,14-TETRAENOATE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
12Y51Ligand/Ion(2R)-1-{[(R)-HYDROXY{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-TETRAHYDROXY-4-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}-3-(OCTADECANOYLOXY)PROPAN-2-YL (5Z,8Z,11Z,14Z)-ICOSA-5,8,11,14-TETRAENOATE
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
12Y51Ligand/Ion(2R)-1-{[(R)-HYDROXY{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-TETRAHYDROXY-4-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}-3-(OCTADECANOYLOXY)PROPAN-2-YL (5Z,8Z,11Z,14Z)-ICOSA-5,8,11,14-TETRAENOATE
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
12Y51Ligand/Ion(2R)-1-{[(R)-HYDROXY{[(1R,2R,3R,4R,5S,6R)-2,3,5,6-TETRAHYDROXY-4-(PHOSPHONOOXY)CYCLOHEXYL]OXY}PHOSPHORYL]OXY}-3-(OCTADECANOYLOXY)PROPAN-2-YL (5Z,8Z,11Z,14Z)-ICOSA-5,8,11,14-TETRAENOATE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:64 , THR A:65 , ARG A:66 , ILE A:67 , THR A:68 , LEU A:69 , GLN A:86 , LYS A:125 , LYS A:126 , ASN A:129 , HIS A:157 , HIS A:158 , TYR A:164 , SER A:183 , SER A:190 , ALA A:191 , ALA A:192 , GLN A:219 , VAL A:222 , ILE A:227 , LYS A:351 , GLU A:355 , ARG A:359 , HOH A:646 , HOH A:656 , HOH A:670 , HOH A:689 , HOH A:704 , HOH A:713 , HOH A:727 , HOH A:737binding site for residue 2Y5 A 501
2AC2SOFTWARELEU B:64 , THR B:65 , ARG B:66 , ILE B:67 , THR B:68 , LEU B:69 , MET B:79 , ARG B:82 , GLN B:86 , LYS B:126 , ASN B:129 , HIS B:157 , HIS B:158 , TYR B:164 , SER B:183 , SER B:190 , ALA B:191 , ALA B:192 , THR B:198 , VAL B:222 , ILE B:234 , LYS B:351 , GLU B:355 , ARG B:359 , HOH B:677 , HOH B:700 , HOH B:701binding site for residue 2Y5 B 501
3AC3SOFTWAREILE C:55 , LEU C:64 , THR C:65 , ARG C:66 , ILE C:67 , THR C:68 , LEU C:69 , LYS C:125 , LYS C:126 , ASN C:129 , HIS C:157 , HIS C:158 , TYR C:164 , SER C:183 , ALA C:192 , THR C:198 , VAL C:222 , LYS C:351 , GLU C:355 , ARG C:359 , HOH C:671 , HOH C:680 , HOH C:698binding site for residue 2Y5 C 501
4AC4SOFTWARELEU D:64 , THR D:65 , ARG D:66 , ILE D:67 , THR D:68 , LEU D:69 , ARG D:82 , GLN D:86 , LYS D:126 , ASN D:129 , HIS D:157 , HIS D:158 , TYR D:164 , SER D:183 , ALA D:192 , THR D:198 , VAL D:222 , ILE D:227 , MET D:232 , ILE D:234 , LYS D:351 , GLU D:355 , ARG D:359 , HOH D:674 , HOH D:675 , HOH D:693 , HOH D:694 , HOH D:695binding site for residue 2Y5 D 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PH7)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1His A:158 -Pro A:159
2Phe A:260 -Gly A:261
3His B:158 -Pro B:159
4His C:158 -Pro C:159
5His D:158 -Pro D:159

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PH7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PH7)

(-) Exons   (0, 0)

(no "Exon" information available for 4PH7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:401
                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh...hhhhhhhhhhhhhh............hhh.eeeeehhhhhhhh..hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh......eee......eeeeeee.....eeeeeeeeee....eeeeeeeehhh.eeeeeee.eeeee....eeeee..eeeeeeeeee.....eeeeeee..eeeee.......eeeeeeeeeee...eeeeeeee..........eeeeeeee....eeeeeeee...eeeeee........eeeee............hhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.......eee........eee........hhhhhhhhhhh..........hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ph7 A  35 IDTDDIDEDDESGHNIILNIISQLRPGCDLTRITLPTFILEKKSMLERVTNQLQFPEFLLQAHSEKDPLKRFLYVMKWYLAGWHIAPKAVKKPLNPVLGEYFTAYWDLPNKQQAYYISEQTSHHPPECAYFYMIPESSIRVDGVVIPKSRFLGNSSAAMMDGSTVLQFLDIKDGNGKPEKYVLTQPNVYVRGILFGKMRIELGDHMIIKSPNFQADIEFKTKGYVFGTYDAIEGTVKDYDGNAYYEISGKWNDVMYLKDLKQPRSSPKVFLDTHKESPLRPKVRPLSEQGEYESRKLWKKVTDALAVRNHPVATEEKFQIEDHQRQLAKKRIEDGVEFHPKLFRRSKPGEDLDYCIYKNIPVDEDPEKQIRSILQIAPILPGQQFTDKFFIPAFEKIKSQK 435
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434 


Chain B from PDB  Type:PROTEIN  Length:395
                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh...hhhhhhhhhhhhh......hhhhh..hhh.eeeeehhhhhhhh..hhhhhhhhhhh.hhhhhhhhhhhhhhh..........eee......eeeeeee.....eeeeeeeeee....eeeeeeeehhh.eeeeeee.eeeee....eeeee..eeeeeeeeee.....eeeeeee..eeeee.......eeeeeeeeeee....eeeeee.......eeeeee.....eeeeeee....eeeeee........eeeee............hhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh........eee........eee........hhhhhhhhhhhhh........hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ph7 B  35 IDTDDIDEDDESGHNIILNIISQLRPGCDLTRITLPTFILEKKSMLERVTNQLQFPEFLLQAHSEKDPLKRFLYVMKWYLAGWHIAPKAVKKPLNPVLGEYFTAYWDLPNKQQAYYISEQTSHHPPECAYFYMIPESSIRVDGVVIPKSRFLGNSSAAMMDGSTVLQFLDIKDGNGKPEKYVLTQPNVYVRGILFGKMRIELGDHMIIKSPNFQADIEFKTKTYDAIEGTVKDYDGNAYYEISGKWNDVMYLKDLKQPRSSPKVFLDTHKESPLRPKVRPLSEQGEYESRKLWKKVTDALAVRNHPVATEEKFQIEDHQRQLAKKRIEDGVEFHPKLFRRSKPGEDLDYCIYKNIPVDEDPEKQIRSILQIAPILPGQQFTDKFFIPAFEKIKSQ 434
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254 ||    269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429     
                                                                                                                                                                                                                                                       256|                                                                                                                                                                            
                                                                                                                                                                                                                                                        262                                                                                                                                                                            


Chain C from PDB  Type:PROTEIN  Length:395
                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh...hhhhhhhhhhh............hhh.eeeeehhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh......eee......eeeeeee.....eeeeeeeeee....eeeeeeeehhh.eeeeeee.eeeee....eeeee..eeeeeeeeee.....eeeeeee..eeeee.......eeeeeeeeeee....eeeeee............eeeeee.....eeeeeee....eeeeee........eeeee............hhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh........eee........eee........hhhhhhhhhhhhh........hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ph7 C  36 DTDDIDESGHNIILNIISQLRPGCDLTRITLPTFILEKKSMLERVTNQLQFPEFLLQAHSEKDPLKRFLYVMKWYLAGWHIAPKAVKKPLNPVLGEYFTAYWDLPNKQQAYYISEQTSHHPPECAYFYMIPESSIRVDGVVIPKSRFLGNSSAAMMDGSTVLQFLDIKDGNGKPEKYVLTQPNVYVRGILFGKMRIELGDHMIIKSPNFQADIEFKTKGYVFGTYDAIEGTVKDYDGNAYYEISGKWNDVMYLKDLKQPRSSPKVFLDTHKESPLRPKVRPLSEQGEYESRKLWKKVTDALAVRNHPVATEEKFQIEDHQRQLAKKRIEDGVEFHPKLFRRSKPGEDLDYCIYKNIPVDEDPEKQIRSILQIAPILPGQQFTDKFFIPAFEKIKS 433
                                  ||48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428     
                                 42|                                                                                                                                                                                                                                                                                                                                                                                                   
                                  46                                                                                                                                                                                                                                                                                                                                                                                                   


Chain D from PDB  Type:PROTEIN  Length:407
                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh...hhhhhhhhhhhhh......hhhhh..hhh.eeeeehhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh......eee......eeeeeee.....eeeeeeeeee....eeeeeeeehhh.eeeeeee.eeeee....eeeee..eeeeeeeeee.....eeeeeee..eeeee.......eeeeeeeeeee...eeeeeee............eeeeeee....eeeeeee....eeeeee........eeeee............hhhhh...hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh........eee........eee........hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ph7 D  36 DTDDIDEDDESGHNIILNIISQLRPGCDLTRITLPTFILEKKSMLERVTNQLQFPEFLLQAHSEKDPLKRFLYVMKWYLAGWHIAPKAVKKPLNPVLGEYFTAYWDLPNKQQAYYISEQTSHHPPECAYFYMIPESSIRVDGVVIPKSRFLGNSSAAMMDGSTVLQFLDIKDGNGKPEKYVLTQPNVYVRGILFGKMRIELGDHMIIKSPNFQADIEFKTKGYVFGTYDAIEGTVKDYDGNAYYEISGKWNDVMYLKDLKQPRSSPKVFLDTHKESPLRPKVRPLSEQGEYESRKLWKKVTDALAVRNHPVATEEKFQIEDHQRQLAKKRIEDGVEFHPKLFRRSKPGEDLDYCIYKNIPVDEDPEKQIRSILQIAPILPGQQFTDKFFIPAFEKIKSQKKMIENEK 442
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PH7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PH7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PH7)

(-) Gene Ontology  (25, 25)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OSH6_YEAST | Q02201: 4b2z

(-) Related Entries Specified in the PDB File

3spw 3SPW CONTAINS A HOMOLOGOUS PROTEIN WITH THE SAME LIGAND PI4P