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(-) Description

Title :  C-TERMINAL DOMAIN OF CAPSID PROTEIN FROM BOVINE LEUKEMIA VIRUS
 
Authors :  F. Trajtenberg, G. Obal, O. Pritsch, A. Buschiazzo
Date :  03 May 14  (Deposition) - 10 Jun 15  (Release) - 15 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.46
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Retroviral Capsid Ctd, All Alpha (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Obal, F. Trajtenberg, F. Carrion, L. Tome, N. Larrieux, X. Zhang, O. Pritsch, A. Buschiazzo
Structural Virology. Conformational Plasticity Of A Native Retroviral Capsid Revealed By X-Ray Crystallography.
Science V. 349 95 2015
PubMed-ID: 26044299  |  Reference-DOI: 10.1126/SCIENCE.AAA5182

(-) Compounds

Molecule 1 - BLV CAPSID
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: N-TERMINAL DOMAIN NTD (UNP RESIDUES 238-324)
    Gene: GAG-PRO-POL
    Organism Common: BLV
    Organism Scientific: BOVINE LEUKEMIA VIRUS
    Organism Taxid: 11901

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4PH1)

(-) Sites  (0, 0)

(no "Site" information available for 4PH1)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PH1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PH1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PH1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PH1)

(-) Exons   (0, 0)

(no "Exon" information available for 4PH1)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:73
                                                                                                         
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh......hhhhhhhhhhhhhhhh.hhhhhhhhhhhh.hhhhhhhhhhh.....hhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 4ph1 A 129 SVQPWSTIVQGPAESYVEFVNRLQISLADNPKEPIIDSLSYANANKECQQILQGRGLVAAPVGQKLQACAHWA 206
                                   138       148       158|      173       183       193       203   
                                                       158|                                          
                                                        164                                          


Chain B from PDB  Type:PROTEIN  Length:76
                                                                                                            
               SCOP domains ---------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh......hhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.hhhhhhhhhhhh....hhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------- Transcript
                 4ph1 B 131 QPWSTIVQGPAESYVEFVNRLQISLADNLPVPKEPIIDSLSYANANKECQQILQGRGLVAAPVGQKLQACAHWAPK 208
                                   140       150       160|      172       182       192       202      
                                                       160|                                             
                                                        163                                             


Chain C from PDB  Type:PROTEIN  Length:79
                                                                                                               
               SCOP domains ------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhh......hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh.hhhhhhhhhhh.....hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------- Transcript
                 4ph1 C 129 SVQPWSTIVQGPAESYVEFVNRLQISLADNLPDGVPKEPIIDSLSYANANKECQQILQGRGLVAAPVGQKLQACAHWAP 207
                                   138       148       158       168       178       188       198
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PH1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PH1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PH1)

(-) Gene Ontology  (28, 28)

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        A7KWZ1_BLV | A7KWZ1: 4ph0

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