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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF 5-CARBOXYMETHYL-2-HYDROXYMUCONATE DELTA-ISOMERASE FROM MYCOBACTERIUM SMEGMATIS
 
Authors :  P. S. Horanyi, J. Abendroth, D. Lorimer, T. Edwards, Seattle Structur Genomics Center For Infectious Disease (Ssgcid)
Date :  01 May 14  (Deposition) - 19 Nov 14  (Release) - 19 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. S. Horanyi, J. Abendroth, D. Lorimer, T. Edwards
X-Ray Crystal Structure Of 5-Carboxymethyl-2-Hydroxymuconat Delta-Isomerase From Mycobacterium Smegmatis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 5-CARBOXYMETHYL-2-HYDROXYMUCONATE DELTA-ISOMERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Gene: MSMEG_2382, MSMEI_2322
    Organism Scientific: MYCOBACTERIUM SMEGMATIS
    Organism Taxid: 246196
    Strain: ATCC 700084 / MC(2)155
    Synonym: PUTATIVE 2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE ISOMERASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1NA2Ligand/IonSODIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:84 , GLU A:132 , GLU A:134 , ASP A:163 , HOH A:554binding site for residue NA A 301
2AC2SOFTWAREALA A:152 , ILE A:155 , HOH A:421 , HOH A:490 , HOH A:592binding site for residue NA A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PFZ)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1Asp A:127 -Pro A:128
2Gly A:189 -Pro A:190
3Glu B:94 -Met B:95
4Met B:95 -Gly B:96
5Gly B:96 -Gly B:97
6Asp B:127 -Pro B:128
7Gly B:189 -Pro B:190

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PFZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PFZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4PFZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:250
                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eeeeeeee......eeeee.........eeeeeee.hhhee........eeee..............eeeehhh.ee.....eee......eee.eeeeeee.......hhhhhhh.eeeeeeee..eehhhhhhhh.hhhhhh....eeeeeeee...hhhh.eeeeee..eeeeeee.hhh..hhhhhhhhhhhhh......eee.......eee....eeeeee...eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pfz A  22 MRLGRIASPDGVAFVSIEGDGPDAVCKEIAEHPFGNPNFTGRSWPLADVRLLAPILASKVIAVGKNYAAHVAPEDPVIFLKPNTAIIGPNVPIQLPADADPVHHEGELAIVIGRPCKDVPAARAAEFILGYTIGNDVSARDQQRKDGQWMRAKGHDTFCPLGPWIVTDLDPSDVELRTEVNGQVRQRSRTSLLLHDIGRLVEWTSAVMTLLPGDVILTGTPEGVGPIEDGDTVSITVEGIGTLTNPVVRK 277
                                    31        41        51        61        71        81        91|      107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277
                                                                                                91|                                                                                                                                                                                   
                                                                                                 98                                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:251
                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eeeeeeee......eeee.......eee....ee........eeee....................eeeehhh.ee.....eee......eee.eeeeeee.......hhhhhhh.eeeeeeee..eehhhhhhhh.hhhhhh....eeeeeeee...hhhh.eeeeee..eeeeeee.hhh..hhhhhhhhhhhhh......eee.......ee.....eeeeee...eeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pfz B  22 MRLGRIASPDGVAFVSIEGDGPDAVCKEIPNFTGRSWPLADVRLLAPILASKVIAVGKNYAAHAEEMGGVAPEDPVIFLKPNTAIIGPNVPIQLPADADPVHHEGELAIVIGRPCKDVPAARAAEFILGYTIGNDVSARDQQRKDGQWMRAKGHDTFCPLGPWIVTDLDPSDVELRTEVNGQVRQRSRTSLLLHDIGRLVEWTSAVMTLLPGDVILTGTPEGVGPIEDGDTVSITVEGIGTLTNPVVRKGK 279
                                    31        41        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278 
                                                       50|                                                                                                                                                                                                                             
                                                        58
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PFZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PFZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PFZ)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Asp A:127 - Pro A:128   [ RasMol ]  
    Asp B:127 - Pro B:128   [ RasMol ]  
    Glu B:94 - Met B:95   [ RasMol ]  
    Gly A:189 - Pro A:190   [ RasMol ]  
    Gly B:189 - Pro B:190   [ RasMol ]  
    Gly B:96 - Gly B:97   [ RasMol ]  
    Met B:95 - Gly B:96   [ RasMol ]  
 

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