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(-) Description

Title :  CRYSTAL STRUCTURE OF CALCIUM-LOADED S100B BOUND TO SC1475
 
Authors :  M. C. Cavalier, A. D. Pierce, P. T. Wilder, D. Neau, E. A. Toth, D. J. Weber
Date :  22 Apr 14  (Deposition) - 15 Oct 14  (Release) - 27 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.18
Chains :  Asym./Biol. Unit :  A,X
Keywords :  Malignant Melanoma, Calcium Binding, Complex, Covalent Inhibitor, Metal Binding Protein-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. C. Cavalier, A. D. Pierce, P. T. Wilder, M. J. Alasady, K. G. Hartman, D. B. Neau, T. L. Foley, A. Jadhav, D. J. Maloney, A. Simeonov, E. A. Toth D. J. Weber
Covalent Small Molecule Inhibitors Of Ca(2+)-Bound S100B.
Biochemistry V. 53 6628 2014
PubMed-ID: 25268459  |  Reference-DOI: 10.1021/BI5005552

(-) Compounds

Molecule 1 - PROTEIN S100-B
    Chains: X, A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: S100B
    Organism Common: BOVINE
    Organism Scientific: BOS TAURUS
    Organism Taxid: 9913
    Synonym: S-100 PROTEIN BETA CHAIN,S-100 PROTEIN SUBUNIT BETA,S100 CALCIUM-BINDING PROTEIN B

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AX

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION
2REV2Ligand/Ion2,3-DIMETHOXY-5-[(1S)-1-PHENYLPROPYL]BENZENE-1,4-DIOL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:7 , VAL A:8 , PHE X:43 , ALA X:83 , CYS X:84 , PHE X:87 , PHE X:88binding site for residue REV X 101
2AC2SOFTWARESER X:18 , GLU X:21 , ASP X:23 , LYS X:26 , GLU X:31 , HOH X:203binding site for residue CA X 102
3AC3SOFTWAREASP X:61 , ASP X:63 , ASP X:65 , GLU X:67 , GLU X:72 , HOH X:202binding site for residue CA X 103
4AC4SOFTWAREASP A:61 , ASP A:63 , ASP A:65 , GLU A:67 , GLU A:72 , HOH A:208binding site for residue CA A 102
5AC5SOFTWARESER A:18 , GLU A:21 , ASP A:23 , LYS A:26 , GLU A:31 , HOH A:203binding site for residue CA A 103
6AC6SOFTWAREPHE A:43 , LEU A:44 , ILE A:80 , THR A:81 , THR A:82 , ALA A:83 , HIS A:85 , GLU A:86 , PHE A:87 , PHE A:88 , VAL X:8 , ILE X:11binding site for Di-peptide REV A 101 and CYS A 84

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PE4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PE4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PE4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PE4)

(-) Exons   (0, 0)

(no "Exon" information available for 4PE4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:90
                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh........hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  4pe4 A  0 MSELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMITTACHEFFE 89
                                     9        19        29        39        49        59        69        79        89


Chain X from PDB  Type:PROTEIN  Length:90
                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh........hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  4pe4 X  0 MSELEKAVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMITTACHEFFE 89
                                     9        19        29        39        49        59        69        79        89
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PE4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PE4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4PE4)

(-) Gene Ontology  (28, 28)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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  S100B_BOVIN | P02638
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        S100B_BOVIN | P02638: 1cfp 1mho 1psb 3cr2 3cr4 3cr5 3gk1 3gk2 3gk4 3iqo 3iqq 3lk0 3lk1 3lle 3rlz 3rm1 4fqo 4pdz 4pe0 4pe1 4pe7 5dkn 5dkq 5dkr 5er4 5er5

(-) Related Entries Specified in the PDB File

4pdz 4pe0 4pe1 4pe7