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(-) Description

Title :  THE STRUCTURE OF BDCA (YJGI) FROM E. COLI
 
Authors :  R. Page, W. Peti, D. Lord
Date :  16 Apr 14  (Deposition) - 11 Mar 15  (Release) - 11 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.05
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Nadp(H) Oxidoreductase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. M. Lord, A. U. Baran, T. K. Wood, W. Peti, R. Page
Bdca, A Protein Important For Escherichia Coli Biofilm Dispersal, Is A Short-Chain Dehydrogenase/Reductase That Binds Specifically To Nadph.
Plos One V. 9 05751 2014
PubMed-ID: 25244619  |  Reference-DOI: 10.1371/JOURNAL.PONE.0105751

(-) Compounds

Molecule 1 - BDCA (YJGI)
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ECP02994389_4551
    Organism Scientific: ESCHERICHIA COLI P0299438.9
    Organism Taxid: 1116044

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2PGE4Ligand/IonTRIETHYLENE GLYCOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:7 , ASP A:77 , GLU A:123 , GLY A:124 , ALA A:217binding site for residue PGE A 301
2AC2SOFTWAREARG A:16 , GLY A:17 , ARG A:24binding site for residue PGE A 302
3AC3SOFTWAREARG A:158 , MET A:212 , TRP A:215 , THR A:230 , ALA B:147 , LYS B:150 , SER B:151 , GLN B:154binding site for residue 1PE B 301
4AC4SOFTWAREGLN A:49 , LYS B:7 , ASP B:77 , GLY B:124 , ALA B:217binding site for residue PGE B 302
5AC5SOFTWAREARG A:63 , ALA B:61 , ARG B:63 , ASP B:100 , LYS B:104binding site for residue PGE B 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PCV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PCV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PCV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PCV)

(-) Exons   (0, 0)

(no "Exon" information available for 4PCV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:187
                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee...hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhh.eeee....hhhhhhhhhhh.....eeeee....hhhhhhhhhhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhhhhhhhhhh....eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pcv A   2 GAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAKRLAQETGATAVFTDSADRDAVIDVVRKSGALDILVVNAGINADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPGQPEEVAGMVAWLAGPEASFVTGAMHTI 231
                                    11        21        31        41        51        61        71        81   ||  100       110       120       130  ||   149       159       169       204       214       224       
                                                                                                              85|                                   133|                                178|                           
                                                                                                               95                                    143                                 204                           


Chain B from PDB  Type:PROTEIN  Length:189
                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeee....hhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhh.eeee....hhhhhhhhhhh.....eeeee......hhhhhhhhhhhhhhhhhhhhhhhhh......eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee..hhhhhhhhhh.hhhhh...eeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pcv B   0 HMGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAKRLAQETGATAVFTDSADRDAVIDVVRKSGALDILVVNAGALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNGMAAYAASKSALQGMARGLARDFGPRGITINVVQPEEVAGMVAWLAGPEASFVTGAMHTI 231
                                     9        19        29        39        49        59        69        79    ||  95       105       115       125       142       152       162       172   ||  212       222         
                                                                                                               84|                                        134|                               176|                        
                                                                                                                91                                         142                                207
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PCV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PCV)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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