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(-) Description

Title :  CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM ROSEOBACTER DENITRIFICANS OCH 114 (RD1_1052, TARGET EFI-510238) WITH BOUND L-GALACTONATE
 
Authors :  M. W. Vetting, N. F. Al Obaidi, L. L. Morisco, S. R. Wasserman, M. Stead, J. D. Attonito, A. Scott Glenn, S. Chowdhury, B. Evans, B. Hillerich, R. D. Seidel, K. L. Whalen, J. A. Gerlt, S. C. Almo, Enzyme Function In (Efi)
Date :  15 Apr 14  (Deposition) - 07 May 14  (Release) - 26 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Trap Periplasmic Solute Binding Family, Enzyme Function Initiative, Efi, Structural Genomics, Solute-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. W. Vetting, N. Al-Obaidi, S. Zhao, B. San Francisco, J. Kim, D. J. Wichelecki, J. T. Bouvier, J. O. Solbiati, H. Vu, X. Zhang, D. A. Rodionov, J. D. Love, B. S. Hillerich, R. D. Seidel, R. J. Quinn, A. L. Osterman, J. E. Cronan, M. P. Jacobson, J. A. Gerlt, S. C. Almo
Experimental Strategies For Functional Annotation And Metabolism Discovery: Targeted Screening Of Solute Binding Proteins And Unbiased Panning Of Metabolomes.
Biochemistry V. 54 909 2015
PubMed-ID: 25540822  |  Reference-DOI: 10.1021/BI501388Y

(-) Compounds

Molecule 1 - C4-DICARBOXYLATE TRANSPORT SYSTEM, SUBSTRATE-BINDING PROTEIN, PUTATIVE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RD1_1052
    Organism Common: ERYTHROBACTER SP. (STRAIN OCH 114)
    Organism Scientific: ROSEOBACTER DENITRIFICANS
    Organism Taxid: 375451
    Strain: OCH 114

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric/Biological Unit (2, 12)
No.NameCountTypeFull Name
12Q21Ligand/IonL-GALACTONIC ACID
2MSE11Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:36 , GLU A:75 , GLY A:93 , GLU A:94 , SER A:95 , ARG A:148 , ARG A:151 , ARG A:171 , PRO A:173 , ASN A:211 , LEU A:215 , HOH A:644 , HOH A:678binding site for residue 2Q2 A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PCD)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PCD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PCD)

(-) Exons   (0, 0)

(no "Exon" information available for 4PCD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:300
                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee......hhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhheeeeeeee...eeeee.....hhhhh...eeee..hhhhhhhhhhhh.eeee.hhhhhhhhhhh.....eeeehhhhhhhhhhhh..eeeeeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee..hhhhhhhhhhhhhhhhh...hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4pcd A  25 SmQEmTLKLGHLANEQNAWHLAAVKFGEELSTLTDGRIAVEVFPNESLGKEIDLINGmQLGTVDmTITGESLQNWAPmAALLAVPYAYKSLEHmDEVASGEIGEQIKQQIIEKAQVRPIAFFARGPRNLTSQRPITSPADLDGmKmRVPNVPLFVDVWSALGASPTPmAFSEVFTSLQNGVIDGQENPLALIRSANFNEVQGYVNQTEHVRSWIYLTIAESTWAKLSEDDQNAVmQAAATAQEYERGLLLESLAEDRGYLESKGmTFVEVDGAAFQAAAKDAVLANVSEEIRPIVESLFS 324
                             |  |   34        44        54        64        74       |84    |   94       104       114   |   124       134       144       154       164   | | 174       184       194       204       214       224       234       244       254    |  264       274       284    |  294       304       314       324
                             |  |                                                   82-MSE 89-MSE      102-MSE         118-MSE                                           168-MSE                 192-MSE                                                            259-MSE                       289-MSE                               
                            26-MSE                                                                                                                                         170-MSE                                                                                                                                                      
                               29-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PCD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PCD)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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