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(-) Description

Title :  CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM RUEGERIA POMEROYI DSS-3 (SPO1773, TARGET EFI-510260) WITH BOUND BENZOIC ACID
 
Authors :  M. W. Vetting, N. F. Al Obaidi, L. L. Morisco, S. R. Wasserman, M. Stead, J. D. Attonito, A. Scott Glenn, S. Chowdhury, B. Evans, B. Hillerich, R. D. Seidel, K. L. Whalen, J. A. Gerlt, S. C. Almo, Enzyme Function In (Efi)
Date :  12 Apr 14  (Deposition) - 07 May 14  (Release) - 26 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Trap Periplasmic Solute Binding Family, Enzyme Function Initiative, Efi, Structural Genomics, Solute-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. W. Vetting, N. Al-Obaidi, S. Zhao, B. San Francisco, J. Kim, D. J. Wichelecki, J. T. Bouvier, J. O. Solbiati, H. Vu, X. Zhang, D. A. Rodionov, J. D. Love, B. S. Hillerich, R. D. Seidel, R. J. Quinn, A. L. Osterman, J. E. Cronan, M. P. Jacobson, J. A. Gerlt, S. C. Almo
Experimental Strategies For Functional Annotation And Metabolism Discovery: Targeted Screening Of Solute Binding Proteins And Unbiased Panning Of Metabolomes.
Biochemistry V. 54 909 2015
PubMed-ID: 25540822  |  Reference-DOI: 10.1021/BI501388Y

(-) Compounds

Molecule 1 - TRAP DICARBOXYLATE TRANSPORTER, DCTP SUBUNIT, PUTATIVE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SPO1773
    Mutation: YES
    Organism Scientific: RUEGERIA POMEROYI
    Organism Taxid: 246200
    Strain: DSS-3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 16)

Asymmetric/Biological Unit (2, 16)
No.NameCountTypeFull Name
1BEZ1Ligand/IonBENZOIC ACID
2MSE15Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:41 , THR A:91 , ARG A:150 , ARG A:170 , THR A:172 , LEU A:193 , MSE A:210 , LEU A:214 , PHE A:235 , HOH A:696binding site for residue BEZ A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4PBH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4PBH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4PBH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4PBH)

(-) Exons   (0, 0)

(no "Exon" information available for 4PBH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:308
                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee......hhhhhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.hhhhhhheeeeeeee....eeee.....hhhhhh..eeee..hhhhhhhhhhhh.eeee.hhhhhhhhhhh....eeeehhhhhhhhhhhhhh.eeee......eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee.hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4pbh A  27 KEFRLGLITPSPHTWTKAAEAFGAELSEKSGGAHSVSVFPARQLGNEAQmLQQLQTGALDmAFmTVAEVSNRVPNmGAFYAPYLAGDINHAAAILRSDTARGmLAVLPQEAGVVGVGFGSAGmRQILSRGAVNSAADLSGLKLRITPFDPILDFYNALGAAPTPmPLPAVYDALANGQVDAIDmDVELINVLKCHEHADTILISNHmmFPmVGLISARVYAGmSDADKAmISELmAKHVDSTLDVYmVKEPEWTDALTKVGKTFKRVDQSFFGDAIAQWETIWADKAPSLPELRKTAADLQAENLYFQ 334
                                    36        46        56        66        76        86|  |    96     | 106       116       126  |    136       146  |    156       166       176       186    |  196       206   |   216       226      |236|      246  |    256    |  266      |276       286       296       306       316       326        
                                                                            76-MSE     87-MSE        102-MSE                    129-MSE             149-MSE                                   191-MSE            210-MSE                233-MSE         249-MSE  |    |         273-MSE                                                         
                                                                                          90-MSE                                                                                                                                         234-MSE               256-MSE|                                                                         
                                                                                                                                                                                                                                            237-MSE                 261-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4PBH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4PBH)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        DCTP_RUEPO | Q5LSJ5: 4paf 4pai

(-) Related Entries Specified in the PDB File

4paf 4pai