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(-) Description

Title :  CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM MIF IN COMPLEX WITH 3-[(2-METHYL-6-PHENYLPYRIDIN-4-YL)OXY]PHENOL
 
Authors :  G. Pantouris, E. Lolis
Date :  27 Mar 14  (Deposition) - 15 Oct 14  (Release) - 14 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.02
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  A,B,C  (2x)
Keywords :  Malaria, Inhibitor, Active Site, Complex, Cytokine-Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Pantouris, D. Rajasekaran, A. B. Garcia, V. G. Ruiz, L. Leng, W. L. Jorgensen, R. Bucala, E. J. Lolis
Crystallographic And Receptor Binding Characterization Of Plasmodium Falciparum Macrophage Migration Inhibitory Facto Complexed To Two Potent Inhibitors.
J. Med. Chem. V. 57 8652 2014
PubMed-ID: 25268646  |  Reference-DOI: 10.1021/JM501168Q

(-) Compounds

Molecule 1 - MACROPHAGE MIGRATION INHIBITORY FACTOR-LIKE PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: PLASMODIUM FALCIPARUM
    Organism Taxid: 5833

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): ABC
Biological Unit 2 (2x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
12OE1Ligand/Ion3-[(2-METHYL-6-PHENYLPYRIDIN-4-YL)OXY]PHENOL
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
12OE1Ligand/Ion3-[(2-METHYL-6-PHENYLPYRIDIN-4-YL)OXY]PHENOL
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
12OE2Ligand/Ion3-[(2-METHYL-6-PHENYLPYRIDIN-4-YL)OXY]PHENOL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:1 , TYR A:37 , SER A:64 , ASN A:106 , PHE C:50binding site for residue 2OE A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4P7M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4P7M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4P7M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4P7M)

(-) Exons   (0, 0)

(no "Exon" information available for 4P7M)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:104
                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhhhhhhhhhhh......eeeeee....ee.......eeeeee..hhhhhhhhhhhhhhhhhh.hhh.eeeeee..eeee.hhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------- Transcript
                 4p7m A   1 PCCEVITNVNLPDDNVQSTLSQIENAISDVMGKPLGYIMSNYDYQKNLRFGGSNEAYCFVRITSSNNSALADQITKLLVSNLNVKSRRIYVEFRDNFAFSGSLF 114
                                    10        20        30        40        50        60   ||   76        86        96    || 110    
                                                                                          64|                           101|        
                                                                                           71                            106        


Chain B from PDB  Type:PROTEIN  Length:100
                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhhhhhhhhh......eeeeee....ee.......eeeeee...hhhhhhhhhhhhhhhhh.hhh.eeeeee...eee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                 4p7m B   1 PCCEVITNVNLPDDNVQSTLSQIENAISDVKPLGYIMSNYDYQKNLRFGGSNEAYCFVRITSINNSALADQITKLLVSNLNVKSRRIYVEFRDCNFAFGS 112
                                    10        20        30|       42        52        62  ||    78        88        98   ||  112
                                                        30|                              65|                           102|  || 
                                                         33                               72                            106  || 
                                                                                                                           109| 
                                                                                                                            111 


Chain C from PDB  Type:PROTEIN  Length:93
                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhhhhhhhhh....eeeeee....ee.......eeeeee....hhhhhhhhhhhhhhhhh.hhh.eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------- Transcript
                 4p7m C   1 PCCEVITNVNLPDDNVQSTLSQIENAIDVMLGYIMSNYDYQKNLRFGGSNEAYCFVRITSINNNSALADQITKLLVSNLNVKSRRIYVEFRDA 108
                                    10        20      ||31|       44        54        64|||     79        89        99 ||
                                                     27| ||                           64|||                          101|
                                                      29 ||                            68||                           108
                                                        31|                             69|                              
                                                         35                              72
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4P7M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4P7M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4P7M)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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        Q6Q3H7_PLAFA | Q6Q3H7: 4p7s

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4p7s