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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE METHYLTRANSFERASE FROM PSEUDOMONAS SYRINGAE PV. TOMATO
 
Authors :  C. Chang, J. Mack, S. Clancy, A. Joachimiak, Midwest Center For Stru Genomics (Mcsg)
Date :  26 Mar 14  (Deposition) - 09 Apr 14  (Release) - 06 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Methyltransferase, Psi-Biology, Structural Genomics, Midwest Center For Structural Genomics, Mcsg, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Chang, J. Mack, S. Clancy, A. Joachimiak
Crystal Structure Of Putative Methyltransferase From Pseudomonas Syringae Pv. Tomato
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TRNA (MO5U34)-METHYLTRANSFERASE
    Chains: A, B
    EC Number: 2.1.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG57
    Expression System Strain: BL21(DE3)MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CMOB, PSPTO_4213
    Organism Scientific: PSEUDOMONAS SYRINGAE PV. TOMATO
    Organism Taxid: 223283
    Strain: DC3000

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 24)

Asymmetric/Biological Unit (3, 24)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2BTB1Ligand/Ion2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
3MSE20Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:90 , ASN A:92 , HIS A:97 , ARG A:103 , THR A:264 , PRO A:319 , HOH A:515 , HOH A:555binding site for residue BTB A 401
2AC2SOFTWAREMSE A:242 , GLN A:279 , ARG A:311binding site for residue ACT A 402
3AC3SOFTWAREVAL A:147 , ALA A:175 , LEU A:176 , ARG A:198 , HOH A:691 , HOH A:764binding site for residue ACT A 403
4AC4SOFTWAREGLY B:126 , VAL B:147 , ALA B:175 , LEU B:176 , ARG B:198 , HOH B:653 , HOH B:698binding site for residue ACT B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4P7C)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ser A:84 -Pro A:85
2Gly A:89 -Pro A:90
3Ser B:84 -Pro B:85
4Gly B:89 -Pro B:90

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4P7C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4P7C)

(-) Exons   (0, 0)

(no "Exon" information available for 4P7C)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:322
                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eee.....eee...hhhhhhhhhhhhhh........eee..eee....hhhhhhhhhhhhh.....eeeee....hhhhhhhhhh...eeeee..hhhhhhhhhhhhh......eeee..hhhhh......eeeeeee.hhhhh.hhhhhhhhhhh.eeeeeeeeeeee........ee..............eehhhhhhhhhhhh..eeeeeeeeee...............hhhhhee..eeeee.......eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4p7c A  -2 SNAmIDLAPLVRRLAGTPLAEWANGLQAQLDTKmSKGHGDLQRWQSALDALPALQPEKVDLTDSFTLETECDGETRTVLRKALLGLSPWRKGPFNVFGVHIDTEWRSDWKWSRVSPHLDLKGKRVLDVGCGNGYYQWRmLGAGADSVIGVDPNWLFFCQFQAmQRYLPDLPAWHLPFALEDLPANLEGFDTVFSmGVLYHRKSPIDHLLALKDCLVKGGELVmETLVIPGDVHQVLVPEDRYAQmRNVWFLPSVPALELWmRRAGFTDVRCVDVSHTTVEEQRSTEWmRFQSLGDYLDPNDHSKTVEGLPAPmRAVIVGRKP 319
                               |     7        17        27   |    37        47        57        67        77        87        97       107       117       127       137       147       157  |    167       177       187    |  197       207       217  |    227       237    |  247       257|      267       277       287       297       307  |    317  
                               |                            31-MSE                                                                                                  136-MSE                 160-MSE                         192-MSE                     220-MSE               242-MSE         258-MSE                    285-MSE                  310-MSE     
                               1-MSE                                                                                                                                                                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:319
                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eee.....eee...hhhhhhhhhhhhhh........eee..eee....hhhhhhhhhhhhh.....eeeee....hhhhhhhhhh...eeeee..hhhhhhhhhhhhh......eeee..hhhhh......eeeeeee.hhhhh.hhhhhhhhhhhheeeeeeeeeeee........ee..............eehhhhhhhhhhhh..eeeeeeeeee...............hhhhhee..eeeee.......eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4p7c B   1 mIDLAPLVRRLAGTPLAEWANGLQAQLDTKmSKGHGDLQRWQSALDALPALQPEKVDLTDSFTLETECDGETRTVLRKALLGLSPWRKGPFNVFGVHIDTEWRSDWKWSRVSPHLDLKGKRVLDVGCGNGYYQWRmLGAGADSVIGVDPNWLFFCQFQAmQRYLPDLPAWHLPFALEDLPANLEGFDTVFSmGVLYHRKSPIDHLLALKDCLVKGGELVmETLVIPGDVHQVLVPEDRYAQmRNVWFLPSVPALELWmRRAGFTDVRCVDVSHTTVEEQRSTEWmRFQSLGDYLDPNDHSKTVEGLPAPmRAVIVGRKP 319
                            |       10        20        30|       40        50        60        70        80        90       100       110       120       130     | 140       150       160       170       180       190 |     200       210       220       230       240 |     250       260       270       280    |  290       300       310         
                            1-MSE                        31-MSE                                                                                                  136-MSE                 160-MSE                         192-MSE                     220-MSE               242-MSE         258-MSE                    285-MSE                  310-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4P7C)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4P7C)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4P7C)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Gly A:89 - Pro A:90   [ RasMol ]  
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    Ser B:84 - Pro B:85   [ RasMol ]  
 

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