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(-) Description

Title :  CRYSTAL STRUCTURE OF THE COMPUTATIONALLY DESIGNED TRANSMEMBRANE METALLOTRANSPORTER WITH 4-BROMOPHENYLALANINE IN OCTYL GLUCOSIDE
 
Authors :  N. H. Joh, R. Acharya, W. F. Degrado
Date :  25 Mar 14  (Deposition) - 24 Dec 14  (Release) - 14 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transmembrane, Transporter, De-Novo Designed, 4-Bromophenylalanine, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. H. Joh, T. Wang, M. P. Bhate, R. Acharya, Y. Wu, M. Grabe, M. Hong, G. Grigoryan, W. F. Degrado
De Novo Design Of A Transmembrane Zn2+-Transporting Four-Helix Bundle.
Science V. 346 1520 2014
PubMed-ID: 25525248  |  Reference-DOI: 10.1126/SCIENCE.1261172

(-) Compounds

Molecule 1 - COMPUTATIONALLY DESIGNED TRANSPORTER OF ZN(II) AND PROTON
    Chains: A, B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
14BF2Mod. Amino Acid4-BROMO-L-PHENYLALANINE
2NH22Mod. Amino AcidAMINO GROUP
3SO41Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR B:1 , 4BF B:2 , LYS B:3binding site for residue SO4 B 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4P6J)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4P6J)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4P6J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4P6J)

(-) Exons   (0, 0)

(no "Exon" information available for 4P6J)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:26
                                                         
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  4p6j A  1 YxKEIAHALFSALFALSELYIAVRYx 26
                             |      10        20     |
                             |                      26-NH2
                             2-4BF                    


Chain B from PDB  Type:PROTEIN  Length:26
                                                         
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  4p6j B  1 YxKEIAHALFSALFALSELYIAVRYx 26
                             |      10        20     |
                             |                      26-NH2
                             2-4BF
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4P6J)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4P6J)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4P6J)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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 Related Entries

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(-) Related Entries Specified in the PDB File

4p6k 4p6l