Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  GMPPCP-BOUND STALKLESS-MXA
 
Authors :  M. L. Rennie, S. A. Mckelvie, E. M. Bulloch, R. L. Kingston
Date :  13 Mar 14  (Deposition) - 22 Oct 14  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Gtpase, Dynamin-Related Protein, Antiviral, Signaling Protein, Antiviral Protein-Hydrolase Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. L. Rennie, S. A. Mckelvie, E. M. Bulloch, R. L. Kingston
Transient Dimerization Of Human Mxa Promotes Gtp Hydrolysis Resulting In A Mechanical Power Stroke.
Structure V. 22 1433 2014
PubMed-ID: 25295396  |  Reference-DOI: 10.1016/J.STR.2014.08.015

(-) Compounds

Molecule 1 - INTERFERON-INDUCED GTP-BINDING PROTEIN MX1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 43-361, 636-662
    Gene: MX1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: INTERFERON-INDUCED PROTEIN P78,IFI-78K,INTERFERON-REGULATED RESISTANCE GTP-BINDING PROTEIN MXA,MYXOMA RESISTANCE PROTEIN 1, MYXOVIRUS RESISTANCE PROTEIN 1
 
Molecule 2 - INTERFERON-INDUCED GTP-BINDING PROTEIN MX1
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 43-361, 636-662
    Gene: MX1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: INTERFERON-INDUCED PROTEIN P78,IFI-78K,INTERFERON-REGULATED RESISTANCE GTP-BINDING PROTEIN MXA,MYXOMA RESISTANCE PROTEIN 1, MYXOVIRUS RESISTANCE PROTEIN 1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 34)

Asymmetric/Biological Unit (3, 34)
No.NameCountTypeFull Name
1GCP2Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
2MG2Ligand/IonMAGNESIUM ION
3UNK30Mod. Amino Acid

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:78 , GLN A:79 , SER A:80 , SER A:81 , GLY A:82 , LYS A:83 , SER A:84 , SER A:85 , ARG A:97 , GLY A:98 , GLY A:100 , ILE A:101 , VAL A:102 , THR A:103 , GLY A:181 , LYS A:248 , ASP A:250 , LEU A:251 , LYS A:279 , CYS A:280 , ARG A:281 , GLY A:282 , GLN A:283 , ILE A:286 , MG A:402 , HOH A:501 , HOH A:502 , ASP B:253binding site for residue GCP A 401
2AC2SOFTWARESER A:84 , THR A:103 , GCP A:401 , HOH A:501 , HOH A:502binding site for residue MG A 402
3AC3SOFTWAREASP A:253 , GLN B:79 , SER B:80 , SER B:81 , GLY B:82 , LYS B:83 , SER B:84 , SER B:85 , ARG B:97 , GLY B:98 , VAL B:102 , THR B:103 , GLY B:181 , LYS B:248 , ASP B:250 , LEU B:251 , LYS B:279 , CYS B:280 , ARG B:281 , GLY B:282 , GLN B:283 , ILE B:286 , MG B:702 , HOH B:801 , HOH B:802binding site for residue GCP B 701
4AC4SOFTWARESER B:84 , THR B:103 , GCP B:701 , HOH B:801 , HOH B:802binding site for residue MG B 702

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4P4S)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4P4S)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4P4S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4P4S)

(-) Exons   (0, 0)

(no "Exon" information available for 4P4S)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:303
                                                                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh...eeeeee....hhhhhhhhhhh..............eeeeeee.......eeeeee..eeeee.hhhhhhhhhhhhhhhhhh.........eeeeeee.....eeeee..............hhhhhhhhhhhhhhh...eeeeeeee...hhhhhhhhhhhhhhh.....eeeeeehhhhh...hhhhhhhhhh.........eee....hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4p4s A  52 xxxxxxxxxxxxLPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPSLAEKLTSELITHISKSLPLLxxxxxxxxxxxxxxxxxx 360
                            ||||||||61|||     77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337     ||347|||||||357|||
                            |||||||60-UNK                                                                                                                                                                                                                                                                              343-UNK||352-UNK||||
                           52-UNK|||61-UNK                                                                                                                                                                                                                                                                              344-UNK||353-UNK|||
                            53-UNK|| 62-UNK                                                                                                                                                                                                                                                                              345-UNK||354-UNK||
                             54-UNK|  63-UNK                                                                                                                                                                                                                                                                              346-UNK| 355-UNK|
                              55-UNK   70                                                                                                                                                                                                                                                                                  347-UNK  356-UNK
                               56-UNK                                                                                                                                                                                                                                                                                       348-UNK  357-UNK
                                57-UNK                                                                                                                                                                                                                                                                                       349-UNK  358-UNK
                                 58-UNK                                                                                                                                                                                                                                                                                       350-UNK  359-UNK
                                  59-UNK                                                                                                                                                                                                                                                                                       351-UNK  360-UNK


Chain B from PDB  Type:PROTEIN  Length:336
                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhh..............eeeeeee.......eeeeee..eeeee.hhhhhhhhhhhhhhhhhh.........eeeeeee.....eeeee..............hhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhh.....eeeeeehhhhh...hhhhhhhhhh.........eee....hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4p4s B  51 PCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPSLAEKLTSELITHISKSLPLLENQIKETHQRITEELQKYGGDPKAKFLKERLARLTQARRRLAQF 660
                                    60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360||     644       654      
                                                                                                                                                                                                                                                                                                                                                361|                        
                                                                                                                                                                                                                                                                                                                                                 636
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4P4S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4P4S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4P4S)

(-) Gene Ontology  (22, 22)

Asymmetric/Biological Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    GCP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    UNK  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4p4s)
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4p4s
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  MX1_HUMAN | P20591
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  MX1_HUMAN | P20591
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MX1_HUMAN | P20591: 3ljb 3szr 3zys 4p4t 4p4u 5gtm

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4P4S)