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(-) Description

Title :  EXTENDED-SYNAPTOTAGMIN 2, SMP - C2A - C2B DOMAINS
 
Authors :  C. M. Schauder, X. Wu, K. M. Reinisch
Date :  10 Mar 14  (Deposition) - 14 May 14  (Release) - 16 Jul 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.44
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Endocytosis, Signal Transduction, Membrane Contact Site, Lipid Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. M. Schauder, X. Wu, Y. Saheki, P. Narayanaswamy, F. Torta, M. R. Wenk P. De Camilli, K. M. Reinisch
Structure Of A Lipid-Bound Extended Synaptotagmin Indicates A Role In Lipid Transfer.
Nature V. 510 552 2014
PubMed-ID: 24847877  |  Reference-DOI: 10.1038/NATURE13269

(-) Compounds

Molecule 1 - EXTENDED SYNAPTOTAGMIN-2
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: K-12
    Expression System Taxid: 83333
    Expression System Vector Type: PLASMID
    Fragment: SMP-C2A-C2B DOMAINS (UNP RESIDUES 191-662)
    Gene: ESYT2, FAM62B, KIAA1228
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: E-SYT2, CHR2SYT

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1EGC2Ligand/Ion2-(2-{2-[2-(2-{2-[2-(2-{2-[4-(1,1,3,3-TETRAMETHYL-BUTYL)-PHENOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHANOL
2PEE2Ligand/IonPHOSPHATIDYLETHANOLAMINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:291 , LEU A:331 , PRO A:334 , ASN A:335 , ARG A:336 , ILE A:337 , GLU B:249binding site for residue EGC A 701
2AC2SOFTWAREPHE A:189 , ILE A:193 , VAL A:214 , LEU A:219 , PHE A:244 , ILE A:326 , ILE A:327 , TYR A:330 , LEU A:331 , HOH A:811binding site for residue PEE A 702
3AC3SOFTWARETYR B:330 , LEU B:331 , PRO B:334 , ASN B:335 , ARG B:336 , ILE B:337binding site for residue EGC B 701
4AC4SOFTWARETRP B:178 , ILE B:193 , VAL B:197 , ALA B:200 , LEU B:219 , PHE B:244 , ILE B:266 , LEU B:318 , ILE B:326 , ILE B:327 , TYR B:330binding site for residue PEE B 702

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4P42)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1Glu A:277 -Pro A:278
2Met A:283 -Pro A:284
3Leu A:333 -Pro A:334
4Glu B:277 -Pro B:278
5Met B:283 -Pro B:284
6Leu B:333 -Pro B:334
7His B:421 -Pro B:422

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4P42)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4P42)

(-) Exons   (0, 0)

(no "Exon" information available for 4P42)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:455
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeeeeee......eeeeeeee........eeeeeeeeeeeeeeeeeee....eeeeeeeeeeeeeeeeee...........eeeeee....eeeeeeehhhhhh........hhhhhhhhhhhhh.....eeee..hhhhhhhhhh....eeeeeeeeeeeeee...............eeeeeee..eeee..........eeeeeeeeee......eeeeeeee.......eeeeeeeehhhhhhhheeeeeee.....eeeeeeeeeeeeee....hhhhhhhhh....eeeeeeeeeee.........eeeeeee..eeee..........eeeeeeeeee......eeeeeeee....eeeeeeeeehhhhhhhhh.eeeeeee........eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4p42 A 163 DTERAEWLNKTVKHMWPFICQFIEKLFRETIEPAVRGANTHLSTFSFTKVDVGQQPLRINGVKVYTENVDKRQIILDLQISFVGNCEIDLEIKRYFCRAGVKSIQIHGTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGLTNLLDVPGLNGLSDTIILDIISNYLVLPNRITVPLVSEVQIAQLRFPVPKGVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYGIIRVGNQIFQSRVIKENLSPKWNEVYEALVYEHPGQELEIELFDEDPDKDDFLGSLMIDLIEVEKERLLDEWFTLDEVPKGKLHLRLEWLTLMPNASNLDKVLTDIGLSSALLILYLDSARNLPSSSNPNPVVQMSVGHKAQESKIRYKTNEPVWEENFTFFIHNPKRQDLEVEVRDEQHQCSLGNLKVPLSQLLTSEDMTVSQRFQLSNSGPNSTIKMKIALRVLHLE 630
                                   172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492 ||    511       521||     535       545       555       565       575       585       595       605       615       625     
                                                                                                                                                                                                                                                                                                                                                                     494|               522|                                                                                                       
                                                                                                                                                                                                                                                                                                                                                                      504                527                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:431
                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.eeeeeee......eeeeeee.....eeeeeeeeeeeeeeeeeee.hhheeeeeeeeeeeeeeeeee...........eeeeee....eeeeeeehhhhhhh.......hhhhhhhhhhhhh.....eeee.........eeeeeeeeee....eeeeee..eeee..........eeeeeeeeee......eeeeeeee....eeeeeeeeehhhhhhh.eeeeeee.......eeeeeeeeeeee....hhhhhhhhhhh....eeeeeeeeeee.............eeeeee....eee..........eeeeeeeeee......eeeeeeee....eeeeeeeeehhhhhhhhh.eeeeeee........eeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4p42 B 164 TERAEWLNKTVKHMWPFICQFIEKLFRETIEPAVRGANTHLSTFSFTKVDVGQQPLRINGVKVYTKRQIILDLQISFVGNCEIDLEIKRYFCRAGVKSIQIHGTMRVILEPLIGDMPLVGALSIFFLRKPLLEINWTGLTNLLDVPGLNGLSDTIILDIISNYLVLPNRITVPLVSRFPVPKGVLRIHFIEAQDLPYGIIRVGNQIFQSRVIKENLSPKWNEVYEALVYEHPGQELEIELFDEDPDDFLGSLMIDLIEVEKERLLDEWFTLDEVPKGKLHLRLEWLTLMPNASNLDKVLTDIKAGLSSALLILYLDSARNLPSGKKISSNPNPVVQMSVGHKAQESKIRYKTNEPVWEENFTFFIHNPKRQDLEVEVRDEQHQCSLGNLKVPLSQLLTSEDMTVSQRFQLSNSGPNSTIKMKIALRVLHLE 630
                                   173       183       193       203       213       223    || 237       247       257       267       277       287       297       307       317       327       337     ||354       364    || 390       400       410       420       430    || 442       452       462       472       482       492   ||  509       519       529       539       549       559       569       579       589       599       609       619       629 
                                                                                          228|                                                                                                           343|               369|                                              435|                                                       496|                                                                                                                              
                                                                                           233                                                                                                            351                386                                               438                                                        504
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4P42)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4P42)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4P42)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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  4p42
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ESYT2_HUMAN | A0FGR8: 2dmg 4npj 4npk

(-) Related Entries Specified in the PDB File

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