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(-) Description

Title :  METHANOBACTIN PRODUCTION BY METHANOTROPHIC BACTERIA AND THEIR STRUCTURAL DIVERSITY FROM METHYLOSINUS STRAINS: INSIGHTS INTO COPPER RELEASE
 
Authors :  A. El Ghazouani, A. Basle, C. Dennison
Date :  14 Feb 14  (Deposition) - 20 May 15  (Release) - 20 May 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Copper Uptake, Particulate Methane Monooxygenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. El Ghazouani, A. Basle, C. Dennison
Methanobactin Production By Methanotrophic Bacteria And Their Structural Diversity From Methylosinus Strains: Insights Into Copper Release
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - METHANOBACTIN
    Chains: A, B
    Organism Scientific: METHYLOSINUS SPORIUM
    Organism Taxid: 428
    Strain: NR3K

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
122Q2Mod. Amino Acid(3Z)-5-(2-METHYLPROPYL)-3-(SULFANYLMETHYLIDENE)PYRAZINE-2,6(1H,3H)-DIONE
222W2Mod. Amino Acid2-[(1S,2S)-1-AMINO-2-METHYLBUTYL]-4-(THIOXOMETHYLIDENE)-1,3-OXAZOL-5(4H)-ONE
3CU12Ligand/IonCOPPER (I) ION
Biological Unit 1 (3, 3)
No.NameCountTypeFull Name
122Q1Mod. Amino Acid(3Z)-5-(2-METHYLPROPYL)-3-(SULFANYLMETHYLIDENE)PYRAZINE-2,6(1H,3H)-DIONE
222W1Mod. Amino Acid2-[(1S,2S)-1-AMINO-2-METHYLBUTYL]-4-(THIOXOMETHYLIDENE)-1,3-OXAZOL-5(4H)-ONE
3CU11Ligand/IonCOPPER (I) ION
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
122Q1Mod. Amino Acid(3Z)-5-(2-METHYLPROPYL)-3-(SULFANYLMETHYLIDENE)PYRAZINE-2,6(1H,3H)-DIONE
222W1Mod. Amino Acid2-[(1S,2S)-1-AMINO-2-METHYLBUTYL]-4-(THIOXOMETHYLIDENE)-1,3-OXAZOL-5(4H)-ONE
3CU11Ligand/IonCOPPER (I) ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARE22W A:6 , 22Q B:1binding site for residue CU1 A 101
2AC2SOFTWARE22Q A:1 , 22W B:6binding site for residue CU1 B 101
3AC3SOFTWARECYS A:4 , SER A:5 , PRO A:8 , ASN A:9 , CYS A:10 , CU1 A:101 , HOH A:203 , 22Q B:1 , PRO B:8 , HOH B:202binding site for Ligand residues 22W A 6 through GLY A 7 bound to SER A 5
4AC4SOFTWARE22Q A:1 , SER A:5 , PRO A:8 , HOH A:201 , CYS B:4 , SER B:5 , PRO B:8 , ASN B:9 , CYS B:10 , CU1 B:101 , HOH B:205binding site for Ligand residues 22W B 6 through GLY B 7 bound to SER B 5
5AC5SOFTWARESER A:3 , CYS A:4 , SER A:5 , 22W A:6 , CU1 A:101 , SER B:3 , HOH B:203 , HOH B:210binding site for Di-peptide 22Q B 1 and ALA B 2

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:4 -A:10
2B:4 -B:10

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OZ7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OZ7)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:10
                                         
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                  4oz7 A  1 xASCSxGPNC 10
                            |    |  10
                            |    |    
                            1-22Q|    
                                 6-22W


Chain B from PDB  Type:PROTEIN  Length:10
                                         
               SCOP domains ---------- SCOP domains
               CATH domains ---------- CATH domains
               Pfam domains ---------- Pfam domains
         Sec.struct. author .......... Sec.struct. author
                 SAPs(SNPs) ---------- SAPs(SNPs)
                    PROSITE ---------- PROSITE
                 Transcript ---------- Transcript
                  4oz7 B  1 xASCSxGPNC 10
                            |    |  10
                            |    |    
                            1-22Q|    
                                 6-22W
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OZ7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OZ7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OZ7)

(-) Gene Ontology  (0, 0)

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 Related Entries

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(-) Related Entries Specified in the PDB File

4oz8