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(-) Description

Title :  VESICULOVIRAL MATRIX (M) PROTEIN OCCUPIES NUCLEIC ACID BINDING SITE AT NUCLEOPORIN PAIR RAE1-NUP98
 
Authors :  Y. Ren, B. Quan, H. S. Seo, G. Blobel
Date :  03 Feb 14  (Deposition) - 25 Jun 14  (Release) - 01 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.15
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Mrna Export, Virus, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Quan, H. S. Seo, G. Blobel, Y. Ren
Vesiculoviral Matrix (M) Protein Occupies Nucleic Acid Binding Site At Nucleoporin Pair (Rae1 Nup98).
Proc. Natl. Acad. Sci. Usa V. 111 9127 2014
PubMed-ID: 24927547  |  Reference-DOI: 10.1073/PNAS.1409076111

(-) Compounds

Molecule 1 - MRNA EXPORT FACTOR
    Chains: A
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Taxid: 7111
    Gene: RAE1, MRNP41
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RAE1 PROTEIN HOMOLOG,MRNA-ASSOCIATED PROTEIN MRNP 41
 
Molecule 2 - NUCLEAR PORE COMPLEX PROTEIN NUP98-NUP96
    Chains: B
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Taxid: 7111
    Gene: NUP98, ADAR2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 3 - MATRIX PROTEIN
    Chains: C
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Taxid: 7111
    Organism Common: VSIV
    Organism Scientific: VESICULAR STOMATITIS INDIANA VIRUS
    Organism Taxid: 434490
    Strain: 85CLB SOUTH AMERICA

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4OWR)

(-) Sites  (0, 0)

(no "Site" information available for 4OWR)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OWR)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:180 -Pro A:181

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OWR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OWR)

(-) Exons   (0, 0)

(no "Exon" information available for 4OWR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:331
                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeee.......eeeeeee...eeeeeee.....eeeeeeee....eeeeee.....eeeeee...eeeeee....eeeeeee....eeeeeeeee..eeeeeeee...eeeee........eeee....eeeeeee..eeeeee...eeeeee.....eeeee........eeeee..........eeeeee...eeeeee....hhhhhheeee..ee...eeee..eeeeee......eeeee....eeeee....eeeee...........ee......eeeee......hhhhh......eee........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4owr A  31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAAEELKPR 365
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260  ||   274       284       294       304       314       324       334       344       354       364 
                                                                                                                                                                                                                                                                  263|                                                                                                 
                                                                                                                                                                                                                                                                   268                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:54
                                                                                      
               SCOP domains ------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------ Pfam domains
         Sec.struct. author ..........eeeeee....eeeeeee.hhhhh......hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------ Transcript
                 4owr B 158 TGTTIKFNPPTGTDTMVGVSTNISTKHQCITAMKEYESKSLEELRLEDYQANRK 213
                                   167      |179       189       199       209    
                                          174|                                    
                                           177                                    


Chain C from PDB  Type:PROTEIN  Length:176
                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeeeeeeeeeeeee.....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhheee.....eeeeeeeeeeeeee............eeeeeeeee..eeeeeeeeeeeee........hhhhh......hhhhhhhhh..eeee.......eeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4owr C  49 DEMDTHDPNQLRYEKFFFTVKMTVRSNRPFRTYSDVAAAVSHWDHMYIGMAGKRPFYKILAFLGSSNLKATPGGQPEYHAHCEGRAYLPHRMGKTPPMLNVPEHFRRPFNIGLYKGTIELTMTIYDDESLEAAPMIWDHFNSSKFSDFREKALMFGLIVEKKASGAWVLDSVSHFK 229
                                    58        68        78        88        98       108       118   ||  133       143       153       163       173       183       193       203       213       223      
                                                                                                   122|                                                                                                     
                                                                                                    128
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OWR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OWR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OWR)

(-) Gene Ontology  (63, 79)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Tyr A:180 - Pro A:181   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NUP98_HUMAN | P52948: 1ko6 2q5x 2q5y 3mmy 5a9q
        RAE1L_HUMAN | P78406: 3mmy

(-) Related Entries Specified in the PDB File

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