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Title :   CRYSTAL STRUCTURE OF HALOACID DEHALOGENASE DOMAIN PROTEIN HYDROLASE FROM PLANCTOMYCES LIMNOPHILUS DSM 3776

Authors :   C. Chang, M. Gu, M. Endres, A. Joachimiak, Midwest Center For Struct Genomics (Mcsg)

Date :   24 Jan 14 (Deposition) - 05 Feb 14 (Release) - 25 Feb 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Hydrolase, Putative Phosphatase, Mcsg, Psi-Biology, Structural Genomics, Midwest Center For Structural Genomics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Chang, M. Gu, M. Endres, A. Joachimiak
Crystal Structure Of Haloacid Dehalogenase Domain Protein Hydrolase From Planctomyces Limnophilus Dsm 3776
To Be Published
PubMed: search

Compounds

Molecule 1 - HALOACID DEHALOGENASE DOMAIN PROTEIN HYDROLASE
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG73
	Expression System Strain	:	BL21 (DE3) PGROW7-K
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 24-333
	Gene	:	PLIM_1241
	Organism Scientific	:	PLANCTOMYCES LIMNOPHILUS
	Organism Taxid	:	521674
	Strain	:	DSM 3776

Structural Features

Chains, Units

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (4, 17)

Asymmetric Unit (4, 17)

No.	Name	Count	Type	Full Name
1	CA	1	Ligand/Ion	CALCIUM ION
2	CIT	2	Ligand/Ion	CITRIC ACID
3	EDO	6	Ligand/Ion	1,2-ETHANEDIOL
4	MSE	8	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (3, 32)

No.	Name	Count	Type	Full Name
1	CA	-1	Ligand/Ion	CALCIUM ION
2	CIT	4	Ligand/Ion	CITRIC ACID
3	EDO	12	Ligand/Ion	1,2-ETHANEDIOL
4	MSE	16	Mod. Amino Acid	SELENOMETHIONINE

Sites (9, 9)

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:37 , ARG A:319 , HOH A:622 , HOH A:633	binding site for residue CIT
2	AC2	SOFTWARE	ARG A:150 , PRO A:152 , HIS A:155 , HOH A:660	binding site for residue CIT
3	AC3	SOFTWARE	ILE A:188 , ILE A:207 , GLY A:208 , SER A:210 , EDO A:408 , HOH A:533	binding site for residue EDO
4	AC4	SOFTWARE	ALA A:91 , ASP A:92 , ARG A:98 , ALA A:237 , GLU A:263 , HOH A:509	binding site for residue EDO
5	AC5	SOFTWARE	GLN A:164	binding site for residue EDO
6	AC6	SOFTWARE	ASN A:31 , GLN A:318 , ARG A:319 , LYS A:322	binding site for residue EDO
7	AC7	SOFTWARE	ASP A:67 , ALA A:119 , GLY A:185 , ASP A:235 , HOH A:626	binding site for residue EDO
8	AC8	SOFTWARE	ASN A:231 , PHE A:232 , GLN A:245 , EDO A:403 , HOH A:505	binding site for residue EDO
9	AC9	SOFTWARE	ASP A:65 , ASP A:67 , ASN A:257 , HOH A:662 , HOH A:733	binding site for residue CA

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:305
                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhh.......hhhh.eeee............hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh.hhhhhh.hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.......hhhhh.hhhhhhhhhhhhhh..eeeeeeeeehhhhh.hhhhhhh.hhh.eeeeeeeeeeeee..eeeeeeeeeeee....hhhhhhhhhhh.....eeee.hhhhhhhhhhhhh.....eeeeeeee......ee.........hhhhhhhhhhh.eeeehhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ovy A  24 EEPLPSWNDSAARRAILEYVKSVTTEGSPRFVPVSERIVTFDNDGTLWCEQPmYVQLAFALDRVRLLADKHPEWRTEEPFRAVIEKDLPALAKLGAKGLTELTmATHAGmTDDEFENIVTEWIRKARHPKFHRPYTECVYQPmLELLAFLRQHEFKTFIVSGAGIEFmRPWAKEVYGIPPEQVIGSSVKLKYELRDGKPVLVRLAELNFIDDQAGKPVGIRQVIGRRPVmAVGNSDGDYEmLEYVTSGPANGLGLIVHHTDAVREFAYDRQSPFGRLDRALTDATSKGWIVIDmQRDWKVIFPES 328
                                    33        43        53        63        73  |     83        93       103       113       123   |   133       143       153       163  |    173       183       193       203       213       223       233       243       253       263|      273       283       293       303       313   |   323     
                                                                               76-MSE                                            127-MSE |                              166-MSE                  191-MSE                                                       253-MSE    264-MSE                                              317-MSE       
                                                                                                                                       133-MSE

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (2, 2)

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