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(-) Description

Title :  CRYSTAL STRUCTURE OF THE C-TERMINAL REGULATORY DOMAIN OF MURINE GCN2
 
Authors :  H. He, M. M. Georgiadis
Date :  13 Feb 14  (Deposition) - 16 Apr 14  (Release) - 06 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  C-Terminal Regulatory Domain, Gcn2, 4-Stranded Beta Sheet 3 Helix Bundle, Regulatory Domain Of Eif2 Stress Kinase, Transferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. He, I. Singh, S. A. Wek, S. Dey, T. D. Baird, R. C. Wek, M. M. Georgiadis
Crystal Structures Of Gcn2 Protein Kinase C-Terminal Domain Suggest Regulatory Differences In Yeast And Mammals.
J. Biol. Chem. V. 289 15023 2014
PubMed-ID: 24719324  |  Reference-DOI: 10.1074/JBC.M114.560789

(-) Compounds

Molecule 1 - EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE 4
    Chains: A, B
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL DOMAIN
    Gene: EIF2AK4, GCN2, KIAA1338
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: GCN2-LIKE PROTEIN, MGCN2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric/Biological Unit (2, 9)
No.NameCountTypeFull Name
1EDO7Ligand/Ion1,2-ETHANEDIOL
2SO42Ligand/IonSULFATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:1611 , GLN A:1612 , ARG A:1613 , HOH A:1818 , HOH A:1855 , HOH A:1862BINDING SITE FOR RESIDUE SO4 A 1701
2AC2SOFTWAREASN A:1624 , LYS A:1629BINDING SITE FOR RESIDUE SO4 A 1702
3AC3SOFTWARETYR A:1643 , TYR A:1644 , ARG A:1645 , HOH A:1875BINDING SITE FOR RESIDUE EDO A 1703
4AC4SOFTWARELYS A:1611 , ARG A:1640 , LYS B:1629BINDING SITE FOR RESIDUE EDO A 1704
5AC5SOFTWARELYS A:1603 , GLU B:1595 , ASN B:1599 , TYR B:1623 , HOH B:1845BINDING SITE FOR RESIDUE EDO B 1701
6AC6SOFTWAREGLN B:1585 , SER B:1588 , GLN B:1604 , LEU B:1605 , HOH B:1804 , HOH B:1860BINDING SITE FOR RESIDUE EDO B 1702
7AC7SOFTWAREGLU A:1590 , HOH A:1864 , TYR B:1643 , TYR B:1644 , ARG B:1645BINDING SITE FOR RESIDUE EDO B 1703
8AC8SOFTWARESER B:1542 , ALA B:1543 , SER B:1544 , HOH B:1864 , HOH B:1882BINDING SITE FOR RESIDUE EDO B 1704
9AC9SOFTWARESER A:1542 , ALA A:1543BINDING SITE FOR RESIDUE EDO B 1705

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OTN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OTN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OTN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OTN)

(-) Exons   (0, 0)

(no "Exon" information available for 4OTN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:123
                                                                                                                                                            
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeee..hhhhhhhhh......hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...eeeeeeee....eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                4otn A 1526 GTTVVPTVSVISPEKLSASTRRRHEIQVQTRLQTTLANLHQKSSEIEILAVDLPKETILQFLSLEWDADEQAFNTTVKQLLSRLPKQRYLKLVCDEIYNIKVEKKVSVLFLYSYRDDYYRILF 1648
                                  1535      1545      1555      1565      1575      1585      1595      1605      1615      1625      1635      1645   


Chain B from PDB  Type:PROTEIN  Length:119
                                                                                                                                                        
               SCOP domains ----------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhheeeeeeeee..hhhhhhhhh......hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...eeeeeeee....eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                4otn B 1530 VPTVSVISPEKLSASTRRRHEIQVQTRLQTTLANLHQKSSEIEILAVDLPKETILQFLSLEWDADEQAFNTTVKQLLSRLPKQRYLKLVCDEIYNIKVEKKVSVLFLYSYRDDYYRILF 1648
                                  1539      1549      1559      1569      1579      1589      1599      1609      1619      1629      1639
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OTN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OTN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OTN)

(-) Gene Ontology  (57, 57)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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        E2AK4_MOUSE | Q9QZ05: 1ukx

(-) Related Entries Specified in the PDB File

4otm