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(-) Description

Title :  CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN FROM YEAST GCN2
 
Authors :  H. He, M. M. Georgiadis
Date :  13 Feb 14  (Deposition) - 16 Apr 14  (Release) - 06 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A,B
Keywords :  C-Terminal Regulatory Domain, Gcn2, 4-Stranded Beta Sheet 3 Helix Bundle, Regulatory Domain Of Eif2 Stress Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. He, I. Singh, S. A. Wek, S. Dey, T. D. Baird, R. C. Wek, M. M. Georgiadis
Crystal Structures Of Gcn2 Protein Kinase C-Terminal Domain Suggest Regulatory Differences In Yeast And Mammals.
J. Biol. Chem. V. 289 15023 2014
PubMed-ID: 24719324  |  Reference-DOI: 10.1074/JBC.M114.560789

(-) Compounds

Molecule 1 - SERINE/THREONINE-PROTEIN KINASE GCN2
    Chains: A, B
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: PET28
    Expression System Taxid: 562
    Fragment: C-TERMINAL DOMAIN
    Gene: AAS1, GCN2, YDR283C
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 559292
    Strain: ATCC 204508 / S288C

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4OTM)

(-) Sites  (0, 0)

(no "Site" information available for 4OTM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OTM)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala B:1554 -Asn B:1555

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OTM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OTM)

(-) Exons   (0, 0)

(no "Exon" information available for 4OTM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:114
                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eee.......hhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh...eeeeee.....eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                4otm A 1537 NNQKVIYVPNMATKWVYEDAARNSSNMILHNLSNAPIITVDALRDETLEIISITSLAQKEEWLRKVFGSGNNSTPRSFATSIYNNLSKEAHKGNRWAILYCHKTGKSSVIDLQR 1659
                                  1546  ||  1565      1575      1585      1595      1605      1615      1625      1635      1645      1655    
                                     1549|                                                                                                    
                                      1559                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:118
                                                                                                                                                       
               SCOP domains ---------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee..hhhhh......hhhhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhh....hhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...eeeeee....eeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------- Transcript
                4otm B 1538 NQKVIYVPNMATRSKKANWVYEDAARNSSNMILHNLSNAPIITVDALRDETLEIISITSLAQKEEWLRKVFGSGNNSTPRSFATSIYNNLSKEAHKGNRWAILYCHKTGKSSVIDLQR 1659
                                  1547      1561      1571      1581      1591      1601      1611      1621      1631      1641      1651        
                                          1555|                                                                                                   
                                           1560
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OTM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OTM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OTM)

(-) Gene Ontology  (39, 39)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala B:1554 - Asn B:1555   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GCN2_YEAST | P15442: 1zxe 1zy4 1zy5 1zyc 1zyd 2yz0

(-) Related Entries Specified in the PDB File

4otn