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(-) Description

Title :  X-STRUCTURE OF A VARIANT OF NCR FROM ZYMOMONAS MOBILIS
 
Authors :  M. Genz, N. Strater
Date :  13 Feb 14  (Deposition) - 18 Feb 15  (Release) - 18 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha-/Beta-Hydrolase Fold, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Reich, M. Widmann, M. Genz, B. M. Nestl, B. Hauer
Surface Loops Representing Enzyme Modifying Element In The Field Of Tuning Enzyme Properties
To Be Published
PubMed: search

(-) Compounds

Molecule 1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-28A(+)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PET PLASMID
    Fragment: UNP RESIDUES 1-227, 241-358
    Gene: ZMO1885
    Organism Scientific: ZYMOMONAS MOBILIS
    Organism Taxid: 264203
    Strain: ATCC 31821 / ZM4 / CP4

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
1CL6Ligand/IonCHLORIDE ION
2FMN1Ligand/IonFLAVIN MONONUCLEOTIDE

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:22 , PRO A:23 , LEU A:24 , THR A:25 , ARG A:31 , ALA A:56 , GLN A:98 , ARG A:224 , ARG A:264 , PHE A:272 , ASN A:295 , GLN A:296 , ASP A:297 , PHE A:317 , GLY A:318 , ARG A:319 , TYR A:346 , HOH A:503 , HOH A:689BINDING SITE FOR RESIDUE FMN A 401
2AC2SOFTWAREARG A:9 , HOH A:569 , HOH A:720BINDING SITE FOR RESIDUE CL A 402
3AC3SOFTWARELEU A:162 , LYS A:163 , GLY A:217 , LYS A:218 , GLU A:219BINDING SITE FOR RESIDUE CL A 403
4AC4SOFTWARETHR A:36 , GLU A:37 , LYS A:339BINDING SITE FOR RESIDUE CL A 404
5AC5SOFTWAREGLY A:58 , ILE A:59 , SER A:60 , TRP A:100BINDING SITE FOR RESIDUE CL A 405
6AC6SOFTWAREASP A:75BINDING SITE FOR RESIDUE CL A 406
7AC7SOFTWARETYR A:68 , ARG A:319 , ASP A:340 , HOH A:656BINDING SITE FOR RESIDUE CL A 407

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OT7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OT7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OT7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OT7)

(-) Exons   (0, 0)

(no "Exon" information available for 4OT7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:308
                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee..eee...eee..............hhhhhhhhhhh.....ee...ee...............hhhhhhhhhhhhhhhhhh...eeeeee........hhhhhhhhhhhhhhhhhhhhhh...eeeeeee.............hhhhhhhhhhhhhhhhhhhhh...eeeeee.......hhhhhhhhhhhhhhhh..eeeee...............hhhhhhhhh...eeee...hhhhhhhhhhh....eeeehhhhhhh.hhhhhhhhh......hhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ot7 A   1 MPSLFDPIRFGAFTAKNRIWMAPLTRGRATRDHVPTEIMAEYYAQRASAGLIISEATGISQEGLGWPYAPGIWSDAQVEAWLPITQAVHDAGGLIFAQLWHMGRMVALRLDEIPRLLDDYEKAARHALKAGFDGVQIHAANGYLIDEFIEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPYGVFNGIVQVFIPAAKMLSDLDIAFLGMREGAVDGTFGKTDQPKLSPEIRKVFKPPLVLNQDYTFETAQAALDSGVADAISFGRPFIGNPDLPRRFFEKAPLTKDVIETWYTQTPKGYTDYPLL 359
                                    10        20        30        40        50        60        70        80        90       100     ||144       154       164       174       193       203       213       223       241       251       261       271       281       291       301       311       321       331       341       351        
                                                                                                                                   106|                                       183|                                    232|                                                                                                                      
                                                                                                                                    141                                        193                                     241
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OT7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OT7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OT7)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5NLA1_ZYMMO | Q5NLA1: 4a3u

(-) Related Entries Specified in the PDB File

4a3u WILD TYPE