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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE LIPASE (LIP1) FROM ACINETOBACTER BAUMANNII AYE AT 1.70 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  05 Feb 14  (Deposition) - 19 Feb 14  (Release) - 19 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Pf06342 Family, Duf1057, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Putative Lipase (Lip1) From Acinetobacter Baumannii Aye At 1. 70 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LIPASE
    Chains: A, B
    EC Number: 3.1.1.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 26-330
    Gene: LIP1, ABAYE2810
    Organism Scientific: ACINETOBACTER BAUMANNII
    Organism Taxid: 509173
    Strain: AYE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 19)

Asymmetric Unit (5, 19)
No.NameCountTypeFull Name
115P1Ligand/IonPOLYETHYLENE GLYCOL (N=34)
2GOL1Ligand/IonGLYCEROL
3MSE6Mod. Amino AcidSELENOMETHIONINE
4PE49Ligand/Ion2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
5SO42Ligand/IonSULFATE ION
Biological Unit 1 (3, 10)
No.NameCountTypeFull Name
115P1Ligand/IonPOLYETHYLENE GLYCOL (N=34)
2GOL-1Ligand/IonGLYCEROL
3MSE3Mod. Amino AcidSELENOMETHIONINE
4PE46Ligand/Ion2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
5SO4-1Ligand/IonSULFATE ION
Biological Unit 2 (4, 9)
No.NameCountTypeFull Name
115P-1Ligand/IonPOLYETHYLENE GLYCOL (N=34)
2GOL1Ligand/IonGLYCEROL
3MSE3Mod. Amino AcidSELENOMETHIONINE
4PE43Ligand/Ion2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
5SO42Ligand/IonSULFATE ION
Biological Unit 3 (5, 19)
No.NameCountTypeFull Name
115P1Ligand/IonPOLYETHYLENE GLYCOL (N=34)
2GOL1Ligand/IonGLYCEROL
3MSE6Mod. Amino AcidSELENOMETHIONINE
4PE49Ligand/Ion2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL
5SO42Ligand/IonSULFATE ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELEU A:77 , SER A:144 , GLY A:171 , PHE A:198 , SER A:249 , HOH A:535 , HOH A:739 , HOH A:781 , HOH A:804 , GLU B:40 , LEU B:77 , SER B:144 , PHE B:198 , PHE B:211 , PHE B:216 , MSE B:299BINDING SITE FOR RESIDUE 15P A 401
02AC2SOFTWAREILE A:179 , GLN A:189 , TYR A:200 , HOH A:735BINDING SITE FOR RESIDUE PE4 A 402
03AC3SOFTWARETHR A:185 , TYR A:186 , LYS A:188 , GLN A:189 , LEU A:191 , SER A:193 , LYS A:194 , ASP A:197 , TYR A:200 , HOH A:827BINDING SITE FOR RESIDUE PE4 A 403
04AC4SOFTWAREASN A:42 , GLY A:45BINDING SITE FOR RESIDUE PE4 A 404
05AC5SOFTWAREHIS A:89 , THR A:92 , THR A:93 , PHE B:207BINDING SITE FOR RESIDUE PE4 A 405
06AC6SOFTWAREGLN A:310 , GLN A:311 , HOH A:816BINDING SITE FOR RESIDUE PE4 A 406
07AC7SOFTWARELYS A:52 , ASP A:55 , ILE A:56 , THR A:57BINDING SITE FOR RESIDUE PE4 A 407
08AC8SOFTWARESER B:50 , LYS B:52 , THR B:185 , TYR B:186BINDING SITE FOR RESIDUE PE4 B 401
09AC9SOFTWAREASN B:42 , GLY B:45 , PE4 B:403 , HOH B:766BINDING SITE FOR RESIDUE PE4 B 402
10BC1SOFTWAREPHE A:207 , HIS B:89 , THR B:92 , THR B:93 , PE4 B:402BINDING SITE FOR RESIDUE PE4 B 403
11BC2SOFTWAREILE A:309 , HOH A:695 , ASN B:295 , HOH B:545 , HOH B:675 , HOH B:765 , HOH B:773 , HOH B:806BINDING SITE FOR RESIDUE GOL B 404
12BC3SOFTWARELYS A:222 , GLY B:0 , ALA B:26 , ASP B:27 , LYS B:281 , HOH B:616 , HOH B:787 , HOH B:802 , HOH B:833BINDING SITE FOR RESIDUE SO4 B 405
13BC4SOFTWARESER B:111 , GLN B:112 , ASP B:113 , LYS B:203 , PHE B:207 , LYS B:270 , HOH B:604 , HOH B:763 , HOH B:791BINDING SITE FOR RESIDUE SO4 B 406

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OPM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OPM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OPM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OPM)

(-) Exons   (0, 0)

(no "Exon" information available for 4OPM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:299
                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeehhhhhhhhhhhh.eeeeeeee..eeeeeeee......eeeee.....hhhhhhhhhh......eeeee................hhhhhhhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhhhh....hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee.......hhhhhhhhhhh......eee.....hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4opm A   0 GADNIDVSFQTILQQERNWAGLQSKSLKVGDITWSYSEGGSSTKPTLLLIHGLAGSRDNWNRVAHYLTTNYHVIIPDLPGSGETIVSQDFDYSVPNLAEKLRRFVEAANLKGPIHIAGHSLGGSIALLYAGQYPFETKSLFLVDSGGIFRSANTIYLKDPTYLKQLLVSKKGDFNYLLKQTmFNPPFIPKEFLQAQEKLmINQAPQTQKLVDQLIALNKVYTPDSFAVLTKTIDAPTLILWGKQDKIINVEVANELKRLLKNAQPPVILENVGHmPILEAEQLVIQQYVPFLLKVETNQ 323
                            ||      34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204 |     214       224       234       244       254       264       274       284       294    |  304       314         
                            ||                                                                                                                                                                                 206-MSE           224-MSE                                                                    299-MSE                    
                            0|                                                                                                                                                                                                                                                                                                         
                            26                                                                                                                                                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:299
                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeehhhhhhhhhhhh.eeeeeeee..eeeeeeee......eeeee.....hhhhhhhhhh......eeeee................hhhhhhhhhhhhhhhh.....eeeeeehhhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhhhh....hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee.......hhhhhhhhhhh......eee.....hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4opm B   0 GADNIDVSFQTILQQERNWAGLQSKSLKVGDITWSYSEGGSSTKPTLLLIHGLAGSRDNWNRVAHYLTTNYHVIIPDLPGSGETIVSQDFDYSVPNLAEKLRRFVEAANLKGPIHIAGHSLGGSIALLYAGQYPFETKSLFLVDSGGIFRSANTIYLKDPTYLKQLLVSKKGDFNYLLKQTmFNPPFIPKEFLQAQEKLmINQAPQTQKLVDQLIALNKVYTPDSFAVLTKTIDAPTLILWGKQDKIINVEVANELKRLLKNAQPPVILENVGHmPILEAEQLVIQQYVPFLLKVETNQ 323
                            ||      34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204 |     214       224       234       244       254       264       274       284       294    |  304       314         
                            0|                                                                                                                                                                                 206-MSE           224-MSE                                                                    299-MSE                    
                            26
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OPM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OPM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OPM)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)

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