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(-) Description

Title :  CRYSTAL STRUCTURE OF TIR DOMAIN OF TLR6
 
Authors :  H. H Park, T. H Jang
Date :  26 Jan 14  (Deposition) - 06 Aug 14  (Release) - 24 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Tir Fold, Protein Interaction, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. H. Jang, H. H. Park
Crystal Structure Of Tir Domain Of Tlr6 Reveals Novel Dimeric Interface Of Tir-Tir Interaction For Toll-Like Receptor Signaling Pathway.
J. Mol. Biol. V. 426 3305 2014
PubMed-ID: 25088687  |  Reference-DOI: 10.1016/J.JMB.2014.07.024

(-) Compounds

Molecule 1 - TOLL-LIKE RECEPTOR 6
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 640-796
    Gene: TLR6
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4OM7)

(-) Sites  (0, 0)

(no "Site" information available for 4OM7)

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:672 -A:691
2A:712 -B:712
3B:672 -B:691

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OM7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OM7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OM7)

(-) Exons   (0, 0)

(no "Exon" information available for 4OM7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.hhhhhhhhhhhhhhhhhhh...eehhhhhh....hhhhhhhhhhhheeeeeeeehhhhhhhhhhhhhhhh..hhhhh.....eeeee....hhhhh...hhhhhhhhhhh..ee........hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4om7 A 640 LQFHAFISYSEHDSAWVKSELVPYLEKEDIQICLHERNFVPGKSIVENIINCIEKSYKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNNLILILLEPIPQNSIPNKYHKLKALMTQRTYLQWPKEKSKRGLFWANIRAAFN 782
                                   649       659       669       679       689       699       709       719       729       739       749       759       769       779   


Chain B from PDB  Type:PROTEIN  Length:143
                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.hhhhhhhhhhhhhhhhhh....ee..........hhhhhhhhhhhheeeeeeeehhhhhhhhhhhhhhhhh.hhhhh.....eeeee....hhhhh...hhhhhhhhhhh..ee........hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4om7 B 640 LQFHAFISYSEHDSAWVKSELVPYLEKEDIQICLHERNFVPGKSIVENIINCIEKSYKSIFVLSPNFVQSEWCHYELYFAHHNLFHEGSNNLILILLEPIPQNSIPNKYHKLKALMTQRTYLQWPKEKSKRGLFWANIRAAFN 782
                                   649       659       669       679       689       699       709       719       729       739       749       759       769       779
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OM7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OM7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OM7)

(-) Gene Ontology  (34, 34)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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