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(-) Description

Title :  ANCESTRAL STEROID RECEPTOR 1 IN COMPLEX WITH ESTROGEN RESPONSE ELEMENT DNA
 
Authors :  E. O. Ortlund, M. N. Murphy
Date :  24 Jan 14  (Deposition) - 29 Oct 14  (Release) - 29 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B,E,F
Keywords :  Nuclear Receptor Zinc Finger, Transcription Factor, Steroid Receptor Dna Binding, Estrogen Receptor, Transcription-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. N. Mckeown, J. T. Bridgham, D. W. Anderson, M. N. Murphy, E. A. Ortlund, J. W. Thornton
Evolution Of Dna Specificity In A Transcription Factor Family Produced A New Gene Regulatory Module.
Cell(Cambridge, Mass. ) V. 159 58 2014
PubMed-ID: 25259920  |  Reference-DOI: 10.1016/J.CELL.2014.09.003

(-) Compounds

Molecule 1 - ANCSR1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PLIC_HIS
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: DNA BINDING DOMAIN
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Other Details: PHYLOGENETICALLY RECONSTRUCTED
 
Molecule 2 - 5'-D(*CP*CP*AP*GP*GP*TP*CP*AP*GP*AP*GP*TP*GP*AP*CP*CP*TP*GP *A)-3'
    Chains: E
    Engineered: YES
    Other Details: ERE DNA
    Synthetic: YES
 
Molecule 3 - 5'-D(*TP*CP*AP*GP*GP*TP*CP*AP*CP*TP*CP*TP*GP*AP*CP*CP*TP*GP *G)-3'
    Chains: F
    Engineered: YES
    Other Details: ERE DNA
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1NA1Ligand/IonSODIUM ION
2ZN4Ligand/IonZINC ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:7 , CYS A:10 , CYS A:24 , CYS A:27BINDING SITE FOR RESIDUE ZN A 101
2AC2SOFTWARECYS A:43 , CYS A:49 , CYS A:59 , CYS A:62BINDING SITE FOR RESIDUE ZN A 102
3AC3SOFTWAREARG A:33 , TYR A:41 , HOH A:237 , DT F:12 , HOH F:131BINDING SITE FOR RESIDUE NA A 103
4AC4SOFTWARECYS B:7 , CYS B:10 , CYS B:24 , CYS B:27BINDING SITE FOR RESIDUE ZN B 101
5AC5SOFTWARECYS B:43 , CYS B:49 , CYS B:59 , CYS B:62BINDING SITE FOR RESIDUE ZN B 102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OLN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OLN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:70
                                                                                                     
               SCOP domains ---------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..............eee..eeehhhhhhhhhhhh..............hhhhh..hhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  4oln A  2 KPKRLCQVCGDHASGFHYGVWSCEGCKAFFKRSIQVDYVCPATNNCTIDKHRRKSCQACRLRKCLEVGMT 73
                                    11        21        31    ||  43        53        63        73
                                                             36|                                  
                                                              39                                  


Chain B from PDB  Type:PROTEIN  Length:67
                                                                                                  
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eee..eeehhhhhhhhhhhh....................hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  4oln B  4 KRLCQVCGDHASGFHYGVWSCEGCKAFFKRSIQDYVCPATNNCTIDKHRRKSCQACRLRKCLEVGMT 73
                                    13        23        33  ||    46        56        66       
                                                           36|                                 
                                                            40                                 


Chain E from PDB  Type:DNA  Length:19
                                                  
                  4oln E  1 CCAGGTCAGAGTGACCTGA 19
                                    10         


Chain F from PDB  Type:DNA  Length:19
                                                  
                  4oln F  1 TCAGGTCACTCTGACCTGG 19
                                    10
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OLN)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  4oln
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 Related Entries

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(-) Related Entries Specified in the PDB File

4ond ANCESTRAL SR2 DBD HELIX MUTANT - ERE DNA COMPLEX
4oor