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(-) Description

Title :  CARBAMATE KINASE FROM GIARDIA LAMBLIA THIOCARBAMOYLATED BY DISULFIRAM ON CYS242
 
Authors :  K. Lim, O. Herzberg
Date :  23 Jan 14  (Deposition) - 26 Feb 14  (Release) - 30 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Adp, Mg2+, Carbamate, Carbamoyl Phosphate, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Galkin, L. Kulakova, K. Lim, C. Z. Chen, W. Zheng, I. V. Turko, O. Herzberg
Structural Basis For Inactivation Of Giardia Lamblia Carbamate Kinase By Disulfiram.
J. Biol. Chem. V. 289 10502 2014
PubMed-ID: 24558036  |  Reference-DOI: 10.1074/JBC.M114.553123
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CARBAMATE KINASE
    Chains: A, B, C, D
    EC Number: 2.7.2.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDEST-HISMBP
    Expression System Strain: BL21(DE3) STAR
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: GL50803_16453
    Organism Scientific: GIARDIA LAMBLIA
    Organism Taxid: 184922
    Strain: ATCC 50803 / WB CLONE C6

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric Unit (2, 7)
No.NameCountTypeFull Name
1CIT4Ligand/IonCITRIC ACID
2DCD3Ligand/IonDIETHYLCARBAMODITHIOIC ACID
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1CIT2Ligand/IonCITRIC ACID
2DCD2Ligand/IonDIETHYLCARBAMODITHIOIC ACID
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
1CIT2Ligand/IonCITRIC ACID
2DCD1Ligand/IonDIETHYLCARBAMODITHIOIC ACID

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:13 , ASN A:55 , GLY A:56 , PRO A:57 , ARG A:163 , LYS A:216 , HOH A:538 , HOH A:544BINDING SITE FOR RESIDUE CIT A 401
2AC2SOFTWAREASP A:237 , LEU A:239 , SER A:299BINDING SITE FOR RESIDUE DCD A 402
3AC3SOFTWAREVAL B:238 , ASN B:240 , CYS B:242BINDING SITE FOR RESIDUE DCD B 401
4AC4SOFTWAREGLY B:12 , GLY B:13 , GLY B:54 , ASN B:55 , GLY B:56 , PRO B:57 , LYS B:131 , ARG B:163 , LYS B:216 , LYS B:278BINDING SITE FOR RESIDUE CIT B 402
5AC5SOFTWAREGLY C:12 , GLY C:13 , GLY C:54 , ASN C:55 , GLY C:56 , PRO C:57 , LYS C:216 , LYS C:278 , HOH C:2060BINDING SITE FOR RESIDUE CIT C 401
6AC6SOFTWAREASP C:237 , LEU C:239BINDING SITE FOR RESIDUE DCD C 402
7AC7SOFTWAREGLY D:12 , GLY D:13 , GLY D:54 , ASN D:55 , GLY D:56 , PRO D:57 , LYS D:131 , LYS D:216 , LYS D:278 , HOH D:526BINDING SITE FOR RESIDUE CIT D 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OLC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OLC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OLC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OLC)

(-) Exons   (0, 0)

(no "Exon" information available for 4OLC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:308
                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4olca_ A: automated matches                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeehhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee..eeee...hhhhh...eeeeeeehhhhhhhhhhhh....eee.....eeeee....eeee.hhhhhhhhhhh..eeee.....eeeee....eee.....hhhhhhhhhhhhhh..eeeeee...........eeehhhhhhhhhh.......hhhhhhhhhhhhhhhh.eeeeee..hhhhhhh....eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4olc A   2 SAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKILREDAGRGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACIRKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD 316
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 ||    258       268       278       288       298       308        
                                                                                                                                                                                                                                                                           243|                                                                 
                                                                                                                                                                                                                                                                            251                                                                 


Chain B from PDB  Type:PROTEIN  Length:308
                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4olcb_ B: automated matches                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.hhhhh.......hhhhhhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee..eeee...hhhhh...eeeeeeehhhhhhhhhhhh....eee.....eeeee....eeee.hhhhhhhhhhh..eeeeee...eeeee....eee.....hhhhhhhhhhhhh...eeeeee............eehhhhhhhhhh......hhhhhhhhhhhhhhhhh.eeeeee..hhhhhhh....eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4olc B   2 SAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKILREDAGRGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACIRKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD 316
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 ||    258       268       278       288       298       308        
                                                                                                                                                                                                                                                                           243|                                                                 
                                                                                                                                                                                                                                                                            251                                                                 


Chain C from PDB  Type:PROTEIN  Length:308
                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4olcc_ C: automated matches                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.hhhhh.......hhhhhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee...eeee...hhhhh...eeeeeeehhhhhhhhhhhh....eeee...eeeeee....eeee.hhhhhhhhhhh..eee......eeeee....eee.....hhhhhhhhhhhhhh..eeeeee...........eeehhhhhhhhhh......hhhhhhhhhhhhhhhhh.eeeeee..hhhhhhh....eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4olc C   2 SAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKILREDAGRGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACIRKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD 316
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 ||    258       268       278       288       298       308        
                                                                                                                                                                                                                                                                           243|                                                                 
                                                                                                                                                                                                                                                                            251                                                                 


Chain D from PDB  Type:PROTEIN  Length:308
                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4olcd_ D: automated matches                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.hhhhh.......hhhhhhhhhhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeee..eeee...hhhhh...eeeeeeehhhhhhhhhhhh....eee.....eeeee....eeee.hhhhhhhhhhh..eeeeee...eeeee....eee.....hhhhhhhhhhhhhh..eeeeee............eehhhhhhhhhh......hhhhhhhhhhhhhhhhh.eeeeee..hhhhhhh....eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4olc D   2 SAGKTVVIALGGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGAMSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKILREDAGRGWRVVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACIRKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIKD 316
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241 ||    258       268       278       288       298       308        
                                                                                                                                                                                                                                                                           243|                                                                 
                                                                                                                                                                                                                                                                            251
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OLC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OLC)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A8BB85_GIAIC | A8BB85: 3kzf 4jz7 4jz8 4jz9

(-) Related Entries Specified in the PDB File

3kzf APO CARBAMATE KINASE
4jz7 CARBAMATE KINASE WITH BOUND AMP-PNP
4jz8 CARBAMATE KINASE WITH BOUND CITRIC ACID
4jz9 CARBAMATE KINASE WITH BOUND CITRIC ACID