4OJ8 - JenaLib

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Title :   CRYSTAL STRUCTURE OF CARBAPENEM SYNTHASE IN COMPLEX WITH (3S,5S)-CARBAPENAM

Authors :   A. K. Boal, A. C. Rosenzweig

Date :   20 Jan 14 (Deposition) - 02 Apr 14 (Release) - 02 Apr 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B,C  (2x)

Keywords :   Oxidoreductase, Oxygenase, Iron, 2-Oxoglutaric Acid, Antibiotic Biosynthesis, Carbapenam (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   W. C. Chang, Y. Guo, C. Wang, S. E. Butch, A. C. Rosenzweig, A. K. Boal, C. Krebs, J. M. Bollinger
Mechanism Of The C5 Stereoinversion Reaction In The Biosynthesis Of Carbapenem Antibiotics.
Science V. 343 1140 2014
PubMed-ID: 24604200 | Reference-DOI: 10.1126/SCIENCE.1248000

Molecule 1 - (5R)-CARBAPENEM-3-CARBOXYLATE SYNTHASE
	Chains	:	A, B, C
	EC Number	:	1.14.20.3
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	CARC
	Organism Scientific	:	PECTOBACTERIUM CAROTOVORUM SUBSP. CAROTOVORUM
	Organism Taxid	:	555
	Synonym	:	CARBAPENEM SYNTHASE

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (2x)	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 9)

No.	Name	Count	Type	Full Name
1	2TQ	2	Ligand/Ion	(2S,5S)-7-OXO-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLICACID
2	AKG	3	Ligand/Ion	2-OXOGLUTARIC ACID
3	FE2	3	Ligand/Ion	FE (II) ION
4	GOL	1	Ligand/Ion	GLYCEROL

Biological Unit 1 (4, 18)

No.	Name	Count	Type	Full Name
1	2TQ	4	Ligand/Ion	(2S,5S)-7-OXO-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLICACID
2	AKG	6	Ligand/Ion	2-OXOGLUTARIC ACID
3	FE2	6	Ligand/Ion	FE (II) ION
4	GOL	2	Ligand/Ion	GLYCEROL

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:101 , ASP A:103 , HIS A:251 , AKG A:302 , HOH A:401	BINDING SITE FOR RESIDUE FE2 A 301
2	AC2	SOFTWARE	LEU A:84 , VAL A:92 , LEU A:98 , HIS A:101 , ASP A:103 , THR A:130 , HIS A:251 , ARG A:253 , ARG A:263 , LEU A:265 , ARG A:267 , FE2 A:301 , HOH A:401	BINDING SITE FOR RESIDUE AKG A 302
3	AC3	SOFTWARE	HIS B:101 , ASP B:103 , HIS B:251 , AKG B:302 , HOH B:521	BINDING SITE FOR RESIDUE FE2 B 301
4	AC4	SOFTWARE	LEU B:84 , LEU B:98 , HIS B:101 , ASP B:103 , THR B:130 , HIS B:251 , ARG B:253 , ARG B:263 , ARG B:267 , FE2 B:301 , 2TQ B:304 , HOH B:521	BINDING SITE FOR RESIDUE AKG B 302
5	AC5	SOFTWARE	ARG A:186 , ILE B:4 , VAL B:5 , PHE B:7 , ARG B:38 , HOH B:423 , HOH B:443 , HOH B:461	BINDING SITE FOR RESIDUE GOL B 303
6	AC6	SOFTWARE	HIS B:101 , ALA B:102 , ASP B:103 , GLY B:104 , GLY B:105 , LEU B:106 , LEU B:107 , TYR B:164 , TYR B:165 , ARG B:267 , GLN B:269 , AKG B:302 , HOH B:401	BINDING SITE FOR RESIDUE 2TQ B 304
7	AC7	SOFTWARE	HIS C:101 , ASP C:103 , HIS C:251 , AKG C:302 , HOH C:538	BINDING SITE FOR RESIDUE FE2 C 301
8	AC8	SOFTWARE	HIS C:101 , ASP C:103 , THR C:130 , HIS C:251 , ARG C:253 , ARG C:263 , ARG C:267 , FE2 C:301 , HOH C:538	BINDING SITE FOR RESIDUE AKG C 302
9	AC9	SOFTWARE	HIS C:101 , ALA C:102 , ASP C:103 , GLY C:104 , GLY C:105 , LEU C:106 , TYR C:164 , TYR C:191 , ARG C:267 , GLN C:269 , HOH C:401	BINDING SITE FOR RESIDUE 2TQ C 303

(no "SS Bond" information available for 4OJ8)

(no "Cis Peptide Bond" information available for 4OJ8)

(no "SAP(SNP)/Variant" information available for 4OJ8)

(no "PROSITE Motif" information available for 4OJ8)

(no "Exon" information available for 4OJ8)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:253
                                                                                                                                                                                                                                                                                             
               SCOP domains d4oj8a_ A: Carbapenem synthase, CarC                                                                                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeehhhhhhhhhhhhhhhhhhhhheeee.....hhhhhhhhhhh..ee...........eee.............eeee....hhhhh..eeeeeeeeee.......eeeehhhhhhhhhhhhhhhhhhhh.eeeee..ee...eee....eee.............eeeee...hhhhhhhhhhhhhhhhh....eeee......eeeee....eeee........eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oj8 A   2 SEIVKFNPVMASGFGAYIDHRDFLEAKTETIKNLLMRQGFVVVKNLDIDSDTFRDIYSAYGTIVEYVGFGYRDTLKLEGEKGKIVTGRGQLPFHADGGLLLSQVDQVFLYAAEIKNVKFRGATTVCDHALACQEMPAHLLRVLEEETFEVRVLWFKVPVFTDLGWVRKMLIYFPFDEGQPASWEPRIVGFTDHETQAFFQELGAFLKQPRYYYKHFWEDGDLLIMDNRRVIHEREEFNDDDIVRRLYRGQTAD 272
                                    11        21        31        41        51        61     || 77        87        97       107       117       127       137       147       157  ||   179       189       199       209       219       229       239       249       259       269   
                                                                                            67|                                                                                   160|                                                                                                   
                                                                                             74                                                                                    173

Chain B from PDB  Type:PROTEIN  Length:271
                                                                                                                                                                                                                                                                                                               
               SCOP domains d4oj8b_ B: Carbapenem synthase, CarC                                                                                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeehhhhhhhhhhhhhhhhhhhhheeee.....hhhhhhhhhhh..ee...hhhhhhhhhh....eee.............eeee..hhhhh....eeeeeeeeee.......eeeehhhhhhhhhhhhhhhhhhhh.eeeee.hhhhhh.......ee...eee....eee.............eeeee...hhhhhhhhhhhhhhhhh....eeee......eeeee....eeee........eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oj8 B   2 SEIVKFNPVMASGFGAYIDHRDFLEAKTETIKNLLMRQGFVVVKNLDIDSDTFRDIYSAYGTIVEYADEKIGVGFGYRDTLKLEGEKGKIVTGRGQLPFHADGGLLLSQVDQVFLYAAEIKNVKFRGATTVCDHALACQEMPAHLLRVLEEETFEVRVLERGYYVDVSPDGWFKVPVFTDLGWVRKMLIYFPFDEGQPASWEPRIVGFTDHETQAFFQELGAFLKQPRYYYKHFWEDGDLLIMDNRRVIHEREEFNDDDIVRRLYRGQTAD 272
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271

Chain C from PDB  Type:PROTEIN  Length:271
                                                                                                                                                                                                                                                                                                               
               SCOP domains d4oj8c_ C: Carbapenem synthase, CarC                                                                                                                                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............ee.hhhhhhhhhhhhhhhhhhhhheeee.....hhhhhhhhhhhhhee...hhhhhhhhhh....eee.............eeee..hhhhh....eeeeeeeeee.......eeeeehhhhhhhhhhhhhhhhhhh.eeeee.hhhhhh.......ee...eee....eee.............eeeee...hhhhhhhhhhhhhhhhh....eeee......eeeee...eeeee........eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oj8 C   2 SEIVKFNPVMASGFGAYIDHRDFLEAKTETIKNLLMRQGFVVVKNLDIDSDTFRDIYSAYGTIVEYADEKIGVGFGYRDTLKLEGEKGKIVTGRGQLPFHADGGLLLSQVDQVFLYAAEIKNVKFRGATTVCDHALACQEMPAHLLRVLEEETFEVRVLERGYYVDVSPDGWFKVPVFTDLGWVRKMLIYFPFDEGQPASWEPRIVGFTDHETQAFFQELGAFLKQPRYYYKHFWEDGDLLIMDNRRVIHEREEFNDDDIVRRLYRGQTAD 272
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Double-stranded beta-helix (580)

Superfamily: Clavaminate synthase-like (197)

Family: gamma-Butyrobetaine hydroxylase (5)

Protein domain: Carbapenem synthase, CarC (3)

Pectobacterium carotovorum [TaxId: 555] (1)

1a	d4oj8a_	A:
1b	d4oj8b_	B:
1c	d4oj8c_	C:

(no "CATH Domain" information available for 4OJ8)

(no "Pfam Domain" information available for 4OJ8)

Asymmetric Unit(hide GO term definitions)

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Description

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Ligands, Modified Residues, Ions (4, 9)

Sites (9, 9)

SS Bonds (0, 0)

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