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(-) Description

Title :  CRYSTAL STRUCTURE OF CHORISMATE MUTASE FROM BURKHOLDERIA THAILANDENSIS
 
Authors :  Seattle Structural Genomics Center For Infectious Disease, Se Structural Genomics Center For Infectious Disease (Ssgcid)
Date :  20 Jan 14  (Deposition) - 05 Mar 14  (Release) - 05 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,E  (1x)
Biol. Unit 2:  B,C  (1x)
Biol. Unit 3:  D,F  (1x)
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Chorismate Mutase Type Ii, Chorismate Mutase, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. M. Dranow, J. W. Fairman, T. E. Edwards, D. Lorimer, E. Vogan
Crystal Structure Of Chorismate Mutase From Burkholderia Thailandensis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CHORISMATE MUTASE
    Chains: A, B, C, D, E, F
    EC Number: 5.4.99.5
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 32-202
    Gene: BTH_I1596
    Organism Scientific: BURKHOLDERIA THAILANDENSIS E264
    Organism Taxid: 271848
    Strain: E264 / ATCC 700388 / DSM 13276 / CIP 106301

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A   E 
Biological Unit 2 (1x):  BC   
Biological Unit 3 (1x):    D F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 17)

Asymmetric Unit (2, 17)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2NO315Ligand/IonNITRATE ION
Biological Unit 1 (1, 5)
No.NameCountTypeFull Name
1EDO-1Ligand/Ion1,2-ETHANEDIOL
2NO35Ligand/IonNITRATE ION
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2NO36Ligand/IonNITRATE ION
Biological Unit 3 (1, 4)
No.NameCountTypeFull Name
1EDO-1Ligand/Ion1,2-ETHANEDIOL
2NO34Ligand/IonNITRATE ION

(-) Sites  (17, 17)

Asymmetric Unit (17, 17)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:47 , TRP A:171 , THR A:175 , TYR A:177 , GLN A:181 , LYS A:182 , LEU A:185 , HOH A:441BINDING SITE FOR RESIDUE NO3 A 301
02AC2SOFTWAREARG A:72 , ARG A:134 , LEU A:137BINDING SITE FOR RESIDUE NO3 A 302
03AC3SOFTWARESER B:47 , TRP B:171 , THR B:175 , GLN B:181 , LYS B:182BINDING SITE FOR RESIDUE NO3 B 301
04AC4SOFTWAREARG B:49 , SER B:105 , HOH B:489BINDING SITE FOR RESIDUE NO3 B 302
05AC5SOFTWARELYS B:60 , ARG B:72 , ARG B:134 , HOH B:486 , HOH B:500BINDING SITE FOR RESIDUE NO3 B 303
06AC6SOFTWARESER C:47 , TRP C:171 , GLN C:181 , LYS C:182 , LEU C:185BINDING SITE FOR RESIDUE NO3 C 301
07AC7SOFTWAREARG C:49 , ARG C:72 , LEU C:76 , ILE C:102 , SER C:105 , EDO C:305 , HOH C:479 , HOH C:482BINDING SITE FOR RESIDUE NO3 C 302
08AC8SOFTWAREVAL C:56 , LYS C:60 , ARG C:134 , EDO C:305 , HOH C:479BINDING SITE FOR RESIDUE NO3 C 303
09AC9SOFTWAREARG C:176 , TYR C:177 , SER C:179 , HOH C:484BINDING SITE FOR RESIDUE EDO C 304
10BC1SOFTWARELYS C:60 , ILE C:67 , SER C:68 , ASP C:69 , GLU C:73 , GLN C:109 , NO3 C:302 , NO3 C:303BINDING SITE FOR RESIDUE EDO C 305
11BC2SOFTWARESER D:47 , TRP D:171 , THR D:175 , TYR D:177 , GLN D:181 , LYS D:182 , LEU D:185 , HOH D:415BINDING SITE FOR RESIDUE NO3 D 301
12BC3SOFTWARELYS D:60 , ARG D:72 , LEU D:129 , ARG D:134 , LEU D:137BINDING SITE FOR RESIDUE NO3 D 302
13BC4SOFTWARESER E:47 , TRP E:171 , THR E:175 , TYR E:177 , GLN E:181 , LYS E:182 , LEU E:185 , HOH E:410BINDING SITE FOR RESIDUE NO3 E 301
14BC5SOFTWAREVAL E:56 , LYS E:60 , ARG E:134 , NO3 E:303BINDING SITE FOR RESIDUE NO3 E 302
15BC6SOFTWARELYS E:60 , ILE E:67 , ASP E:69 , GLU E:73 , LYS E:106 , GLN E:109 , NO3 E:302BINDING SITE FOR RESIDUE NO3 E 303
16BC7SOFTWARESER F:47 , TRP F:171 , THR F:175 , TYR F:177 , GLN F:181 , LYS F:182 , LEU F:185 , HOH F:401BINDING SITE FOR RESIDUE NO3 F 301
17BC8SOFTWAREVAL F:56 , LYS F:60 , ARG F:72 , ARG F:134BINDING SITE FOR RESIDUE NO3 F 302

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:160 -A:193
2B:160 -B:193
3C:160 -C:193
4D:160 -D:193
5E:160 -E:193
6F:160 -F:193

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OJ7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OJ7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OJ7)

(-) Exons   (0, 0)

(no "Exon" information available for 4OJ7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:160
                                                                                                                                                                                                
               SCOP domains d4oj7a_ A: automated matches                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oj7 A  35 DDTALTNLVALASQRLALAEPVAHWKWINRKPISDPPREAALLTDVEKRATANGVDPAYARTFFDDQIAASKQLQNALFATWRATHGPEGPAPDLATSTRPQLDRLTQSLIAALARVAPLRDAPDCPSRLARSIANWKTLTRYDSAQKDALGTALSHVCA 194
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194


Chain B from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains d4oj7b_ B: automated matches                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4oj7 B  33 DGDDTALTNLVALASQRLALAEPVAHWKWINRKPISDPPREAALLTDVEKRATANGVDPAYARTFFDDQIAASKQLQNALFATWRATHGPEGPAPDLATSTRPQLDRLTQSLIAALARVAPLRDAPDCPSRLARSIANWKTLTRYDSAQKDALGTALSHVCA 194
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192  


Chain C from PDB  Type:PROTEIN  Length:163
                                                                                                                                                                                                   
               SCOP domains d4oj7c_ C: automated matches                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oj7 C  35 DDTALTNLVALASQRLALAEPVAHWKWINRKPISDPPREAALLTDVEKRATANGVDPAYARTFFDDQIAASKQLQNALFATWRATHGPEGPAPDLATSTRPQLDRLTQSLIAALARVAPLRDAPDCPSRLARSIANWKTLTRYDSAQKDALGTALSHVCAAGG 197
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194   


Chain D from PDB  Type:PROTEIN  Length:160
                                                                                                                                                                                                
               SCOP domains d4oj7d_ D: automated matches                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oj7 D  35 DDTALTNLVALASQRLALAEPVAHWKWINRKPISDPPREAALLTDVEKRATANGVDPAYARTFFDDQIAASKQLQNALFATWRATHGPEGPAPDLATSTRPQLDRLTQSLIAALARVAPLRDAPDCPSRLARSIANWKTLTRYDSAQKDALGTALSHVCA 194
                                    44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194


Chain E from PDB  Type:PROTEIN  Length:160
                                                                                                                                                                                                
               SCOP domains d4oj7e_ E: automated matches                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oj7 E  34 GDDTALTNLVALASQRLALAEPVAHWKWINRKPISDPPREAALLTDVEKRATANGVDPAYARTFFDDQIAASKQLQNALFATWRATHGPEGPAPDLATSTRPQLDRLTQSLIAALARVAPLRDAPDCPSRLARSIANWKTLTRYDSAQKDALGTALSHVC 193
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193


Chain F from PDB  Type:PROTEIN  Length:158
                                                                                                                                                                                              
               SCOP domains d4oj7f_ F: automated matches                                                                                                                                   SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oj7 F  36 DTALTNLVALASQRLALAEPVAHWKWINRKPISDPPREAALLTDVEKRATANGVDPAYARTFFDDQIAASKQLQNALFATWRATHGPEGPAPDLATSTRPQLDRLTQSLIAALARVAPLRDAPDCPSRLARSIANWKTLTRYDSAQKDALGTALSHVC 193
                                    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OJ7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OJ7)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)

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