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(-) Description

Title :  CRYSTAL STRUCTRUAL OF A SOLUBLE PROTEIN
 
Authors :  Y. He, Q. Hao, W. Li, C. Yan, N. Yan, P. Yin
Date :  19 Jan 14  (Deposition) - 21 Jan 15  (Release) - 21 Jan 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Start Fold, Pyl-Phosphatases Complex, Aba Signaling Pathway, Hormone Receptor-Hydrolase Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. He, Q. Hao, W. Li, C. Yan, N. Yan, P. Yin
Identification And Characterization Of Aba Receptors In Oryza Sativa
Plos One V. 9 95246 2014
PubMed-ID: 24743650  |  Reference-DOI: 10.1371/JOURNAL.PONE.0095246

(-) Compounds

Molecule 1 - BET V I ALLERGEN-LIKE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: OS06G0562200
    Organism Common: JAPONICA RICE
    Organism Scientific: ORYZA SATIVA JAPONICA GROUP
    Organism Taxid: 39947
    Synonym: OSPYL2
 
Molecule 2 - PROBABLE PROTEIN PHOSPHATASE 2C 6
    Chains: B
    EC Number: 3.1.3.16
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: OS01G0583100
    Organism Common: JAPONICA RICE
    Organism Scientific: ORYZA SATIVA JAPONICA GROUP
    Organism Taxid: 39947
    Synonym: OSPP2C06

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 7)

Asymmetric/Biological Unit (4, 7)
No.NameCountTypeFull Name
1A8S1Ligand/Ion(2Z,4E)-5-[(1S)-1-HYDROXY-2,6,6-TRIMETHYL-4-OXOCYCLOHEX-2-EN-1-YL]-3-METHYLPENTA-2,4-DIENOIC ACID
2CL1Ligand/IonCHLORIDE ION
3MN4Ligand/IonMANGANESE (II) ION
4NA1Ligand/IonSODIUM ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:74 , PHE A:76 , ALA A:104 , SER A:107 , PHE A:123 , TYR A:135 , PHE A:180 , ASN A:188 , HOH A:401 , HOH A:415 , HOH A:423 , HOH A:426 , HOH A:428BINDING SITE FOR RESIDUE A8S A 301
2AC2SOFTWAREARG A:78 , GLU B:161BINDING SITE FOR RESIDUE CL A 302
3AC3SOFTWAREASP B:205 , ASP B:386 , ASP B:448 , HOH B:603 , HOH B:605 , HOH B:640 , HOH B:647BINDING SITE FOR RESIDUE MN B 501
4AC4SOFTWAREASP B:205 , GLY B:206 , HOH B:601 , HOH B:602 , HOH B:603 , HOH B:604BINDING SITE FOR RESIDUE MN B 502
5AC5SOFTWAREASP B:386 , ASP B:390 , HOH B:606 , HOH B:607 , HOH B:608 , HOH B:675BINDING SITE FOR RESIDUE MN B 503
6AC6SOFTWAREASP B:324 , HOH B:614 , HOH B:615BINDING SITE FOR RESIDUE MN B 504
7AC7SOFTWAREARG B:322 , GLU B:323BINDING SITE FOR RESIDUE NA B 505

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OIC)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Val A:126 -Gly A:127
2Lys B:360 -Pro B:361

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OIC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OIC)

(-) Exons   (0, 0)

(no "Exon" information available for 4OIC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:182
                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.hhhhhhhhhhhhhhhh.....eeeeeeeeee..hhhhhhhhhhh..hhhhh...eeeeeeee........eeeeee.......eeeeeeeeee....eeeeeeee........eeeeeeeee.....eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oic A   3 AHVERALREGLTEEERAALEPAVMAHHTFPAATCTSLVTQRVAAPVRAVWPIVRSFGNPQRYKHFVRTCALAAGDGASVGSVREVTVVSGLPASTSTERLEMLDDDRHIISFRVVGGQHRLRNYRSVTSVTEFQPPPPYCVVVESYVVDVPDGNTAEDTRMFTDTVVKLNLQMLAAVAEDSS 200
                                    12        22        32|       51        61        71        81        91       101       111       121       131       141     ||158       168       178       188       198  
                                                        32|                                                                                                      147|                                             
                                                         42                                                                                                       155                                             


Chain B from PDB  Type:PROTEIN  Length:305
                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeeeee........eeeeeeeeeeeeehhhhhh............eeeeeeeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhhhh.........eeeeeeeee...eeeeeee...eeeeee..eeee........hhhhhhhhhhh...eee...eee.........ee.hhhh.......eeeeee....eeeeeeehhhhhh..hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.....eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oic B 140 SVFAVECVPLWGHKSICGRRPEMEDAVVAVSRFFDIPLWMLTGNSVVDGLDPMSFRLPAHFFGVYDGHGGAQVANYCRERLHAALVEELSRIEGSVSGANLGSVEFKKKWEQAFVDCFSRVDEEVGGNAVAPETVGSTAVVAVICSSHIIVANCGDSRAVLCRGKQPVPLSVDHKPNREDEYARIEAEGGKVIQWNGYRVFGVLAMSRSIGDRYLKPWIIPVPEITIVPRAKDDECLVLASDGLWDVMSNEEVCDVARKRILLWHKKNGSSDPAAEAAAECLSKLALQKGSKDNISVIVVDLKAH 460
                                   149       159       169       179       189       199       209       219       229       239       249       259       274       284       294       304       314       324       334       344       354       364       374       384       394       404       425       435       445       455     
                                                                                                                                                         267|                                                                                                                                         413|                                   
                                                                                                                                                          273                                                                                                                                          425
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OIC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OIC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OIC)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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