4OHC - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF OROTATE PHOSPHORIBOSYLTRANSFERASE (OPRTASE) FROM BURKHOLDERIA CENOCEPACIA

Authors :   Seattle Structural Genomics Center For Infectious Disease (S

Date :   17 Jan 14 (Deposition) - 05 Feb 14 (Release) - 05 Feb 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.85

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,D  (1x)
Biol. Unit 2: B,E  (1x)
Biol. Unit 3: C,F  (1x)
Biol. Unit 4: A,B,C,D,E,F  (1x)

Keywords :   Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Oprt, Oprtase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. M. Lukacs, J. Abendroth, T. E. Edwards, D. Lorimer
Crystal Structure Of Orotate Phosphoribosyltransferase (Oprtase) From Burkholderia Cenocepacia
To Be Published
PubMed: search

Molecule 1 - OROTATE PHOSPHORIBOSYLTRANSFERASE
	Chains	:	A, B, C, D, E, F
	EC Number	:	2.4.2.10
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	PYRE, BCAL0204
	Organism Scientific	:	BURKHOLDERIA CENOCEPACIA
	Organism Taxid	:	216591
	Strain	:	J2315
	Synonym	:	OPRT, OPRTASE

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A			D
Biological Unit 2 (1x)	:		B			E
Biological Unit 3 (1x)	:			C			F
Biological Unit 4 (1x)	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 17)

No.	Name	Count	Type	Full Name
1	ACT	6	Ligand/Ion	ACETATE ION
2	EDO	7	Ligand/Ion	1,2-ETHANEDIOL
3	NA	4	Ligand/Ion	SODIUM ION

Biological Unit 1 (2, 6)

No.	Name	Count	Type	Full Name
1	ACT	3	Ligand/Ion	ACETATE ION
2	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	ACT	2	Ligand/Ion	ACETATE ION
2	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 3 (2, 3)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 4 (2, 13)

No.	Name	Count	Type	Full Name
1	ACT	6	Ligand/Ion	ACETATE ION
2	EDO	7	Ligand/Ion	1,2-ETHANEDIOL
3	NA	-1	Ligand/Ion	SODIUM ION

Asymmetric Unit (17, 17)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:113 , ILE A:116 , GLY A:118 , HIS A:119 , LEU A:120 , HOH D:474	BINDING SITE FOR RESIDUE EDO A 301
02	AC2	SOFTWARE	GLU A:73 , ILE A:75 , ASP A:76 , ARG A:125 , HOH A:522 , HOH A:568 , ARG E:53	BINDING SITE FOR RESIDUE EDO A 302
03	AC3	SOFTWARE	GLU A:63 , ARG A:95 , ARG E:56 , GLU E:60	BINDING SITE FOR RESIDUE ACT A 303
04	AC4	SOFTWARE	ARG A:56 , GLU A:60 , GLU F:63 , ARG F:95	BINDING SITE FOR RESIDUE ACT A 304
05	AC5	SOFTWARE	GLU B:73 , ILE B:75 , ASP B:76 , ARG B:125 , HOH B:468 , HOH B:588 , ARG D:53	BINDING SITE FOR RESIDUE EDO B 301
06	AC6	SOFTWARE	GLU B:63 , ARG B:95 , ARG D:56 , GLU D:60	BINDING SITE FOR RESIDUE ACT B 302
07	AC7	SOFTWARE	ASN B:113 , ILE B:116 , HOH B:430 , HOH B:482 , HOH B:495 , HOH B:549	BINDING SITE FOR RESIDUE NA B 303
08	AC8	SOFTWARE	ARG B:53 , GLU C:73 , ILE C:75 , ASP C:76 , ARG C:125 , HOH C:483	BINDING SITE FOR RESIDUE EDO C 301
09	AC9	SOFTWARE	ARG B:56 , GLU B:60 , GLU C:63 , ARG C:95 , HOH C:542	BINDING SITE FOR RESIDUE ACT C 302
10	BC1	SOFTWARE	ARG C:53 , GLU D:73 , ILE D:75 , ASP D:76 , ARG D:125 , HOH D:583	BINDING SITE FOR RESIDUE EDO D 301
11	BC2	SOFTWARE	ARG C:56 , GLU C:60 , GLU D:63 , ARG D:95	BINDING SITE FOR RESIDUE ACT D 302
12	BC3	SOFTWARE	ASN D:113 , ILE D:116 , HOH D:557 , HOH D:562 , HOH D:580	BINDING SITE FOR RESIDUE NA D 303
13	BC4	SOFTWARE	GLU E:73 , ILE E:75 , ASP E:76 , ARG E:125 , HOH E:582 , HOH E:583 , ARG F:53	BINDING SITE FOR RESIDUE EDO E 301
14	BC5	SOFTWARE	GLU E:63 , ARG E:95 , ARG F:56 , GLU F:60	BINDING SITE FOR RESIDUE ACT E 302
15	BC6	SOFTWARE	ASN E:113 , ILE E:116 , HOH E:441 , HOH E:442 , HOH E:536 , HOH E:590	BINDING SITE FOR RESIDUE NA E 303
16	BC7	SOFTWARE	ARG A:53 , GLU F:73 , ILE F:75 , ASP F:76 , ARG F:125 , HOH F:571	BINDING SITE FOR RESIDUE EDO F 301
17	BC8	SOFTWARE	ASN F:113 , ILE F:116 , HOH F:531 , HOH F:532 , HOH F:534 , HOH F:602	BINDING SITE FOR RESIDUE NA F 302

(no "SS Bond" information available for 4OHC)

Asymmetric Unit

No.	Residues
1	Glu A:82	-	Thr A:83
2	Glu B:82	-	Thr B:83
3	Glu C:82	-	Thr C:83
4	Glu D:82	-	Thr D:83
5	Glu E:82	-	Thr E:83
6	Glu F:82	-	Thr F:83

(no "SAP(SNP)/Variant" information available for 4OHC)

(no "PROSITE Motif" information available for 4OHC)

(no "Exon" information available for 4OHC)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:221
                                                                                                                                                                                                                                                             
               SCOP domains d4ohca_ A: automated matches                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh..eee.....ee.....ee.eee.hhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhh..eeee............ee.......eeeeeeeee....hhhhhhhhhhhh..eeeeeeeeee....hhhhhhhhh...eee..eehhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ohc A   2 TGYDRQSISDTTAKILLEVQAVHFNAEKPFIFTSGWASPVYIDCRKLISYPRVRRALMEMAETTITRDIGFEQIDAVAGGETAGIPFAAWIADRMMVPMQYVRKKPKGFGRNAQIEGHLEEGSRVLLVEDLTTDSRSKINFVNALRTAGATVNHCFVLFHYNIFKESVSVLKDIDVDLHALATWWDVLRVAKASGYFETKTLDEVEKFLHAPAEWSAAHGG 222
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221

Chain B from PDB  Type:PROTEIN  Length:222
                                                                                                                                                                                                                                                              
               SCOP domains d4ohcb_ B: automated matches                                                                                                                                                                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh..eee.....ee.....ee.eee.hhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhh..eeee............ee.......eeeeeeeee....hhhhhhhhhhhh..eeeeeeeeee.......hhhhhh...eeeeeeehhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4ohc B   2 TGYDRQSISDTTAKILLEVQAVHFNAEKPFIFTSGWASPVYIDCRKLISYPRVRRALMEMAETTITRDIGFEQIDAVAGGETAGIPFAAWIADRMMVPMQYVRKKPKGFGRNAQIEGHLEEGSRVLLVEDLTTDSRSKINFVNALRTAGATVNHCFVLFHYNIFKESVSVLKDIDVDLHALATWWDVLRVAKASGYFETKTLDEVEKFLHAPAEWSAAHGGA 223
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221

Chain C from PDB  Type:PROTEIN  Length:218
                                                                                                                                                                                                                                                          
               SCOP domains d4ohcc_ C: automated matches                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh..eee............eee.hhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhh..eeee............ee.......eeeeeeeee....hhhhhhhhhhhh..eeeeeeeeee.......hhhhhh...eeeeeeehhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ohc C   2 TGYDRQSISDTTAKILLEVQAVHFNAEKPFIGWASPVYIDCRKLISYPRVRRALMEMAETTITRDIGFEQIDAVAGGETAGIPFAAWIADRMMVPMQYVRKKPKGFGRNAQIEGHLEEGSRVLLVEDLTTDSRSKINFVNALRTAGATVNHCFVLFHYNIFKESVSVLKDIDVDLHALATWWDVLRVAKASGYFETKTLDEVEKFLHAPAEWSAAHGG 222
                                    11        21        31||      44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214        
                                                         32|                                                                                                                                                                                          
                                                          36

Chain D from PDB  Type:PROTEIN  Length:225
                                                                                                                                                                                                                                                                 
               SCOP domains d4ohcd_ D: automated matches                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh..eee.....ee.....ee.eee.hhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhh..eeee............ee........eeeeeeee....hhhhhhhhhhhh.....eeeeeee.......hhhhhh...eeeeeehhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ohc D   2 TGYDRQSISDTTAKILLEVQAVHFNAEKPFIFTSGWASPVYIDCRKLISYPRVRRALMEMAETTITRDIGFEQIDAVAGGETAGIPFAAWIADRMMVPMQYVRKKPKGFGRNAQIEGHLEEGSRVLLVEDLTTDSRSKINFVNALRTAGATVNHCFVLFHYNIFKESVSVLKDIDVDLHALATWWDVLRVAKASGYFETKTLDEVEKFLHAPAEWSAAHGGATAP 226
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221

Chain E from PDB  Type:PROTEIN  Length:221
                                                                                                                                                                                                                                                             
               SCOP domains d4ohce_ E: automated matches                                                                                                                                                                                                  SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh..eee.....ee.....ee.eee.hhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhh..eeee............ee.......eeeeeeeee....hhhhhhhhhhhh..eeeeeeeeee.......hhhhhh...eeeeeeehhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ohc E   2 TGYDRQSISDTTAKILLEVQAVHFNAEKPFIFTSGWASPVYIDCRKLISYPRVRRALMEMAETTITRDIGFEQIDAVAGGETAGIPFAAWIADRMMVPMQYVRKKPKGFGRNAQIEGHLEEGSRVLLVEDLTTDSRSKINFVNALRTAGATVNHCFVLFHYNIFKESVSVLKDIDVDLHALATWWDVLRVAKASGYFETKTLDEVEKFLHAPAEWSAAHGG 222
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221

Chain F from PDB  Type:PROTEIN  Length:225
                                                                                                                                                                                                                                                                 
               SCOP domains d4ohcf_ F: automated matches                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh..eee.....ee.....ee.eee.hhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhh..eeee............ee........eeeeeeee....hhhhhhhhhhhh.....eeeeeee.......hhhhhh...eeeeeeehhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ohc F   2 TGYDRQSISDTTAKILLEVQAVHFNAEKPFIFTSGWASPVYIDCRKLISYPRVRRALMEMAETTITRDIGFEQIDAVAGGETAGIPFAAWIADRMMVPMQYVRKKPKGFGRNAQIEGHLEEGSRVLLVEDLTTDSRSKINFVNALRTAGATVNHCFVLFHYNIFKESVSVLKDIDVDLHALATWWDVLRVAKASGYFETKTLDEVEKFLHAPAEWSAAHGGATAP 226
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: PRTase-like (145)

Superfamily: PRTase-like (145)

Family: automated matches (39)

Protein domain: automated matches (39)

Burkholderia cenocepacia [TaxId: 216591] (1)

1a	d4ohca_	A:
1b	d4ohcb_	B:
1c	d4ohcc_	C:
1d	d4ohcd_	D:
1e	d4ohce_	E:
1f	d4ohcf_	F:

(no "CATH Domain" information available for 4OHC)

(no "Pfam Domain" information available for 4OHC)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Ligands, Modified Residues, Ions
		ACT	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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	Sites
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		BC8	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Glu A:82 - Thr A:83	[ RasMol ]
		Glu B:82 - Thr B:83	[ RasMol ]
		Glu C:82 - Thr C:83	[ RasMol ]
		Glu D:82 - Thr D:83	[ RasMol ]
		Glu E:82 - Thr E:83	[ RasMol ]
		Glu F:82 - Thr F:83	[ RasMol ]

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		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]

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3dez	RELATED ID: SSGCID-BUCEA.18584.A RELATED DB: TARGETTRACK
3m3h

Description

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Chains, Units

Ligands, Modified Residues, Ions (3, 17)

Sites (17, 17)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

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