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(-) Description

Title :  CRYSTAL STRUCTURE OF MILB E103A IN COMPLEX WITH 5-HYDROXYMETHYLCYTIDINE 5'-MONOPHOSPHATE (HMCMP) FROM STREPTOMYCES RIMOFACIENS
 
Authors :  G. Zhao, Y. Zhang, G. Liu, G. Wu, X. He
Date :  17 Jan 14  (Deposition) - 25 Jun 14  (Release) - 19 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Hydrolase, Protein-Hmcmp Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Zhao, G. Wu, Y. Zhang, G. Liu, T. Han, Z. Deng, X. He
Structure Of The N-Glycosidase Milb In Complex With Hydroxymethyl Cmp Reveals Its Arg23 Specifically Recognizes The Substrate And Controls Its Entry
Nucleic Acids Res. V. 42 8115 2014
PubMed-ID: 24920828  |  Reference-DOI: 10.1093/NAR/GKU486

(-) Compounds

Molecule 1 - CMP/HYDROXYMETHYL CMP HYDROLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MILB
    Mutation: YES
    Organism Scientific: STREPTOMYCES RIMOFACIENS
    Organism Taxid: 504097

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
15HM1Ligand/Ion5-(HYDROXYMETHYL)CYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
15HM1Ligand/Ion5-(HYDROXYMETHYL)CYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
15HM2Ligand/Ion5-(HYDROXYMETHYL)CYTIDINE 5'-(DIHYDROGEN PHOSPHATE)

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:19 , GLY A:20 , PRO A:21 , PHE A:22 , ARG A:23 , ALA A:58 , GLU A:62 , PHE A:68 , ASP A:78 , SER A:97 , PRO A:98 , GLY A:99 , THR A:100 , PHE A:126 , LEU A:127 , HOH A:303 , HOH A:305 , HOH A:306 , HOH A:312 , HOH A:317BINDING SITE FOR RESIDUE 5HM A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OHB)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Val A:94 -Pro A:95

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OHB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OHB)

(-) Exons   (0, 0)

(no "Exon" information available for 4OHB)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:159
                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee..hhhhh.......hhhhhhhhhhhhhhhhh...eeeehhhhhhhhh...hhhhhhhhhhhhhhhh.eeee......hhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ohb A  12 AVGSVFLGGPFRQLVDPRTGVMSSGDQNVFSRLIEHFESRGTTVYNAHRREAWGAEFLSPAEATRLDHDEIKAADVFVAFPGVPASPGTHVAIGWASGMGKPMVLLLERDEDYAFLVTGLESQANVEILRFSGTEEIVERLDGAVARVLGRAGEPTVIG 170
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OHB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OHB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OHB)

(-) Gene Ontology  (4, 4)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        B4Y381_9ACTN | B4Y381: 4jel 4jem 4ohr

(-) Related Entries Specified in the PDB File

4ohr