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(-) Description

Title :  CRYSTAL STRUCTURE OF ORNITHINE CARBAMOYLTRANSFERASE FROM BRUCELLA MELITENSIS
 
Authors :  Seattle Structural Gemomics Center For Infectious Disease (S
Date :  17 Jan 14  (Deposition) - 26 Feb 14  (Release) - 26 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (3x)
Biol. Unit 2:  B  (3x)
Keywords :  Ssgcid, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Abendroth, D. Lorimer, T. E. Edwards
Crystal Structure Of Ornithine Carbamoyltransferase From Brucella Melitensis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ORNITHINE CARBAMOYLTRANSFERASE
    Chains: A, B
    EC Number: 2.1.3.3
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BRMEB.00183.A.B1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: ARCB, ARGF, BMEA_A0337
    Organism Scientific: BRUCELLA MELITENSIS
    Organism Taxid: 546272
    Strain: BIOTYPE 2 (STRAIN ATCC 23457)
    Synonym: OTCASE, ORNITHINE CARBAMOYLTRANSFERASE, CATABOLIC

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): A 
Biological Unit 2 (3x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric Unit (2, 6)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2EDO4Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO6Ligand/Ion1,2-ETHANEDIOL
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO6Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:18 , THR A:19 , ARG A:22 , HOH A:682 , HOH A:714 , HOH A:778BINDING SITE FOR RESIDUE EDO A 400
2AC2SOFTWARETHR A:58 , ARG A:59 , GLU A:89 , VAL A:97 , LEU A:98 , HOH A:560BINDING SITE FOR RESIDUE EDO A 401
3AC3SOFTWARETHR A:60 , HIS A:135 , ARG A:293 , HOH A:566BINDING SITE FOR RESIDUE CL A 402
4AC4SOFTWAREALA B:18 , THR B:19 , ARG B:22 , HOH B:696 , HOH B:802BINDING SITE FOR RESIDUE EDO B 400
5AC5SOFTWAREGLU B:89 , VAL B:97 , HOH B:568BINDING SITE FOR RESIDUE EDO B 401
6AC6SOFTWARETHR B:60 , HIS B:135 , ARG B:293 , HOH B:812BINDING SITE FOR RESIDUE CL B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OH7)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Leu A:266 -Pro A:267
2Leu B:266 -Pro B:267

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OH7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OH7)

(-) Exons   (0, 0)

(no "Exon" information available for 4OH7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:302
                                                                                                                                                                                                                                                                                                                                              
               SCOP domains d4oh7a1 A:6-151 automated matches                                                                                                                 d4oh7a2 A:152-307 automated matches                                                                                                                          SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee...hhhhhhhhhhhhhhh..eeeeee..........hhhhhhhhhhhhh.eeeee..hhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhhhhh..eeeee........hhhhhhhhhh..eeeee.hhhhhhh...eeee.........hhhhhhhhhhhhh.hhhhhh......eeee..........hhhhhh....hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oh7 A   6 GIKHFIDLSTVPATELRAILEDAKARKARLKAGEVERPYAGKVLAMIFEKLSTRTRVSFDVGMRQLGGETIMLTGSEMQLGRSETIADTAKVLSRYVDAIMIRTTAHERMLELAEYATVPVINALTDDTHPCQIMADVLTYEEHRGPIKGKTFAWMGDGNNVLHSLVEAAARFDFNVNIATPKGSEPKSQYIDWARANGAGIMSTTDPEKAASGADCIVTDTWVSMGQEDHARGHNVFIPYQVNANLMAKADPKALFMHCLPAHRGEEVTDEVIDGPQSVVFDEAENRLHAQKAILAWCLQD 307
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305  


Chain B from PDB  Type:PROTEIN  Length:299
                                                                                                                                                                                                                                                                                                                                           
               SCOP domains d4oh7b1 B:6-151 automated matches                                                                                                                 d4oh7b2 B:152-307 automated matches                                                                                                                       SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhh..........eeeeee...hhhhhhhhhhhhhhh..eeeeeehhhhh.....hhhhhhhhhhhhh.eeeee..hhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhhhhh..eeeee......hhhhhhhhh..eeeee.hhhhhhh...eeee.........hhhhhhhhhhhhh.hhhhhh......eeee..........hhhhhh....hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oh7 B   6 GIKHFIDLSTVPATELRAILEDAKARKARLKAGEVERPYAGKVLAMIFEKLSTRTRVSFDVGMRQLGGETIMLTGSEMQLGRSETIADTAKVLSRYVDAIMIRTTAHERMLELAEYATVPVINALTDDTHPCQIMADVLTYEEHRGPIKGKTFAWMGDGNNVLHSLVEAAARFDFNVNIATPKGSSQYIDWARANGAGIMSTTDPEKAASGADCIVTDTWVSMGQEDHARGHNVFIPYQVNANLMAKADPKALFMHCLPAHRGEEVTDEVIDGPQSVVFDEAENRLHAQKAILAWCLQD 307
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    || 198       208       218       228       238       248       258       268       278       288       298         
                                                                                                                                                                                                                  190|                                                                                                                 
                                                                                                                                                                                                                   194
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OH7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OH7)

(-) Gene Ontology  (10, 10)

Asymmetric Unit(hide GO term definitions)

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