4OE9 - JenaLib

Title :   THE CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF COMMD9

Authors :   M. Hospenthal, D. Celligoi, J. S. Lott

Date :   12 Jan 14 (Deposition) - 04 Mar 15 (Release) - 04 Mar 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.55

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   All Alpha Helical, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Hospenthal, D. Celligoi, F. J. Mcdonald, J. S. Lott
The Crystal Structure Of The N-Terminal Domain Of Commd9
To Be Published
PubMed: search

Compounds

Molecule 1 - COMM DOMAIN-CONTAINING PROTEIN 9
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	COMMD9, UNP RESIDUES 1-117
	Gene	:	COMMD9, HSPC166
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 10)

Asymmetric Unit (3, 10)

No.	Name	Count	Type	Full Name
1	CIT	3	Ligand/Ion	CITRIC ACID
2	K	1	Ligand/Ion	POTASSIUM ION
3	MSE	6	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (2, 5)

No.	Name	Count	Type	Full Name
1	CIT	2	Ligand/Ion	CITRIC ACID
2	K	-1	Ligand/Ion	POTASSIUM ION
3	MSE	3	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	CIT	1	Ligand/Ion	CITRIC ACID
2	K	-1	Ligand/Ion	POTASSIUM ION
3	MSE	3	Mod. Amino Acid	SELENOMETHIONINE

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:39 , ALA A:40 , HIS A:69 , ARG A:73 , HOH A:341 , HOH A:382 , HOH A:407 , SER B:39 , ALA B:40 , HIS B:69 , ARG B:73 , HOH B:311	BINDING SITE FOR RESIDUE CIT A 201
2	AC2	SOFTWARE	LEU A:19 , LEU A:20 , ALA A:22 , HIS A:95 , ASN A:97 , LEU A:98 , HOH A:344 , LYS B:21 , GLU B:60 , HOH B:388	BINDING SITE FOR RESIDUE CIT A 202
3	AC3	SOFTWARE	LYS A:21 , GLU A:60 , HOH A:405 , LEU B:19 , LEU B:20 , ASN B:97 , HOH B:416 , HOH B:426	BINDING SITE FOR RESIDUE CIT B 201
4	AC4	SOFTWARE	SER B:23 , ALA B:88 , PHE B:90 , HOH B:407 , HOH B:415	BINDING SITE FOR RESIDUE K B 202

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:119
                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 4oe9 A   2 SGAmAALTAEHFAALQSLLKASSKDVVRQLCQESFSSSALGLKKLLDVTCSSLSVTQEEAEELLQALHRmTRLVAFRDLSSAEAILALFPENFHQNLKNLLTKImLEHVSTWRTEAQAN 120
                               |    11        21        31        41        51        61        71        81        91       101    |  111         
                               |                                                                71-MSE                            106-MSE          
                               5-MSE

Chain B from PDB  Type:PROTEIN  Length:116
                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh...hhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 4oe9 B   5 mAALTAEHFAALQSLLKASSKDVVRQLCQESFSSSALGLKKLLDVTCSSLSVTQEEAEELLQALHRmTRLVAFRDLSSAEAILALFPENFHQNLKNLLTKImLEHVSTWRTEAQAN 120
                            |       14        24        34        44        54        64      | 74        84        94       104 |     114      
                            5-MSE                                                            71-MSE                            106-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (8, 8)

Visualization

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Asymmetric Unit
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	Ligands, Modified Residues, Ions
		CIT	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		K	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		MSE	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 4oe9)

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Still Images

Jmol
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	4oe9
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