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(-) Description

Title :  N-ACETYLHEXOSAMINE 1-PHOSPHATE KINASE IN COMPLEX WITH GLCNAC AND AMPPNP
 
Authors :  T. L. Li, K. C. Wang, S. Y. Lyu, Y. C. Liu, C. Y. Chang, C. J. Wu
Date :  09 Jan 14  (Deposition) - 14 May 14  (Release) - 24 Sep 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.72
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase, Sugar Binding, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. C. Wang, S. Y. Lyu, Y. C. Liu, C. Y. Chang, C. J. Wu, T. L. Li
Insights Into The Binding Specificity And Catalytic Mechanism Of N-Acetylhexosamine 1-Phosphate Kinases Through Multiple Reaction Complexes.
Acta Crystallogr. , Sect. D V. 70 1401 2014
PubMed-ID: 24816108  |  Reference-DOI: 10.1107/S1399004714004209

(-) Compounds

Molecule 1 - N-ACETYLHEXOSAMINE 1-PHOSPHATE KINASE
    Chains: A
    EC Number: 2.7.1.162
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MDSC, BN57_1851
    Organism Scientific: BIFIDOBACTERIUM LONGUM
    Organism Taxid: 216816

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric/Biological Unit (3, 12)
No.NameCountTypeFull Name
1ANP1Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
2MSE10Mod. Amino AcidSELENOMETHIONINE
3NDG1Ligand/Ion2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:31 , ILE A:32 , PHE A:149 , ASP A:208 , LYS A:210 , ARG A:246 , GLU A:254 , CYS A:303 , ARG A:306 , TYR A:317 , ANP A:402 , HOH A:506 , HOH A:514 , HOH A:519BINDING SITE FOR RESIDUE NDG A 401
2AC2SOFTWARETYR A:27 , GLY A:30 , HIS A:31 , ILE A:32 , ASN A:33 , ILE A:46 , GLN A:48 , LEU A:80 , LYS A:103 , PHE A:104 , ILE A:105 , ASP A:208 , LYS A:210 , ASN A:213 , ASP A:228 , NDG A:401 , HOH A:527 , HOH A:537 , HOH A:612 , HOH A:733 , HOH A:743 , HOH A:841 , HOH A:842 , HOH A:843 , HOH A:846BINDING SITE FOR RESIDUE ANP A 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OCK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OCK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OCK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OCK)

(-) Exons   (0, 0)

(no "Exon" information available for 4OCK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:355
                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.......eeeeee.......eeeeeee....eeeeee......hhhhhhhhhhhhhhhhhh.................eee..eeeeeee....ee......hhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee....hhh.eeee.....eeee.hhhhheeehhhhhhhhhhhhhh........hhhhh..hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ock A   3 ESNEVLFGIASHFALEGAVTGIEPYGDGHINTTYLVTTDGPRYILQQmNTSIFPDTVNLmRNVELVTSTLKAQGKETLDIVPTTSGATWAEIDGGAWRVYKFIEHTVSYNLVPNPDVFREAGSAFGDFQNFLSEFDASQLTETIAHFHDTPHRFEDFKAALAADKLGRAAACQPEIDFYLSHADQYAVVmDGLRDGSIPLRVTHNDTKLNNILmDATTGKARAIIDLDTImPGSmLFDFGDSIRFGASTALEDEKDLSKVHFSTELFRAYTEGFVGELRGSITAREAELLPFSGNLLTmECGmRFLADYLEGDIYFATKYPEHNLVRTRTQIKLVQEmEQKASETRAIVADImEA 357
                                    12        22        32        42       |52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212   |   222       232|   |  242       252       262       272       282       292       302  |    312       322       332       342       352  |  
                                                                          50-MSE      62-MSE                                                                                                                           192-MSE                 216-MSE          233-MSE                                                             301-MSE                                340-MSE        355-MSE
                                                                                                                                                                                                                                                                    237-MSE                                                             305-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OCK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OCK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OCK)

(-) Gene Ontology  (8, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NAHK_BIFL2 | E8MF12: 4ocj 4oco 4ocp 4ocq 4wh1 4wh2 4wh3
        T2I3Q3_BIFLN | T2I3Q3: 4ocj 4oco 4ocp 4ocq

(-) Related Entries Specified in the PDB File

4ocj 4oco 4ocp 4ocq 4ocu 4ocv