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(-) Description

Title :  PROGESTERONE RECEPTOR WITH BOUND ULIPRISTAL ACETATE AND A PEPTIDE FROM THE CO-REPRESSOR SMRT
 
Authors :  I. Petit-Topin, M. R. Fay, M. Resche-Rigon, A. Ulmann, E. Gainer, M. -E. Oblin, J. Fagart
Date :  06 Jan 14  (Deposition) - 08 Oct 14  (Release) - 08 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.41
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Progesterone Receptor, Steroid Receptor, Nuclear Receptor, Transcription Factor, Women Health, Contraception, Transcription- Peptide Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Petit-Topin, M. Fay, M. Resche-Rigon, A. Ulmann, E. Gainer, M. E. Rafestin-Oblin, J. Fagart
Molecular Determinants Of The Recognition Of Ulipristal Acetate By Oxo-Steroid Receptors.
J. Steroid Biochem. Mol. Biol. V. 44Pb 427 2014
PubMed-ID: 25204619  |  Reference-DOI: 10.1016/J.JSBMB.2014.08.008

(-) Compounds

Molecule 1 - PROGESTERONE RECEPTOR
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Cellular Location: CYTOPLASM
    Expression System Plasmid: PGEXHPRLBD
    Expression System Strain: BL21 CODON PLUS (DE3) RIL
    Expression System Taxid: 469008
    Expression System Vector: PGEXKG
    Expression System Vector Type: PLASMID
    Fragment: STEROID-BINDING REGION
    Gene: NR3C3, PGR
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PR, NUCLEAR RECEPTOR SUBFAMILY 3 GROUP C MEMBER 3
 
Molecule 2 - PEPTIDE FROM NUCLEAR RECEPTOR COREPRESSOR 2
    Chains: B
    Engineered: YES
    Fragment: UNP RESIDUES 2346-2362
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SMRT PEPTIDE
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
12S01Ligand/Ion[(8S,11R,13S,14S,17R)-17-ACETYL-11-[4-(DIMETHYLAMINO)PHENYL]-13-METHYL-3-OXO-1,2,6,7,8,11,12,14,15,16-DECAHYDROCYCLOPENTA[A]PHENANTHREN-17-YL] ACETATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:718 , ASN A:719 , GLY A:722 , GLU A:723 , GLN A:725 , ARG A:766 , LEU A:797 , CYS A:891 , THR A:894 , HOH A:1129BINDING SITE FOR RESIDUE 2S0 A 1001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OAR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4OAR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OAR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OAR)

(-) Exons   (0, 0)

(no "Exon" information available for 4OAR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:241
                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeee..eeehhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh.ee......hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.....ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4oar A  682 QLIPPLINLLMSIEPDVIYAGHDNTKPDTSSSLLTSLNQLGERQLLSVVKWSKSLPGFRNLHIDDQITLIQYSWMSLMVFGLGWRSYKHVSGQMLYFAPDLILNEQRMKESSFYSLCLTMWQIPQEFVKLQVSQEEFLCMKVLLLLNTIPLEGLRSQTQFEEMRSSYIRELIKAIGLRQKGVVSSSQRFYQLTKLLDNLHDLVKQLHLYCLNTFIQSRMSEVIAAQLPKILAGMVKPLLFH  931
                                   691       701       711       721       731       741       751       761       771       781       791       801       811       821       831       841       851       861       871       881       891       910       920       930 
                                                                                                                                                                                                                                                   899|                      
                                                                                                                                                                                                                                                    909                      


Chain B from PDB  Type:PROTEIN  Length:11
                                            
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author .hhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                4oar B 2349 GLEAIIRKALM 2359
                                  2358
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4OAR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OAR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OAR)

(-) Gene Ontology  (43, 50)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NCOR2_HUMAN | Q9Y618: 1kkq 1r2b 1xc5 2gpv 2l5g 2ltp 2odd 2rt5 3r29 3r2a 4a69 5x8q 5x8x
        PRGR_HUMAN | P06401: 1a28 1e3k 1sqn 1sr7 1zuc 2c7a 2ovh 2ovm 2w8y 3d90 3g8o 3hq5 3kba 3zr7 3zra 3zrb 4a2j 4apu 5cc0

(-) Related Entries Specified in the PDB File

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