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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF O-METHYLTRANSFERASE FROM ANAPLASMA PHAGOCYTOPHILUM IN APO FORM
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  03 Jan 14  (Deposition) - 15 Jan 14  (Release) - 20 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, O-Methyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. S. Oliva Chavez, J. W. Fairman, R. F. Felsheim, C. M. Nelson, M. J. Herron, L. Higgins, N. Y. Burkhardt, J. D. Oliver, T. W. Markowski T. J. Kurtti, T. E. Edwards, U. G. Munderloh
An O-Methyltransferase Is Required For Infection Of Tick Cells By Anaplasma Phagocytophilum.
Plos Pathog. V. 11 05248 2015
PubMed-ID: 26544981  |  Reference-DOI: 10.1371/JOURNAL.PPAT.1005248

(-) Compounds

Molecule 1 - O-METHYLTRANSFERASE FAMILY PROTEIN
    Chains: A, B
    EC Number: 2.1.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: APH_0584
    Organism Scientific: ANAPLASMA PHAGOCYTOPHILUM
    Organism Taxid: 212042
    Strain: HZ

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2NA2Ligand/IonSODIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:38 , ASP A:136 , ASP A:162 , ASN A:163BINDING SITE FOR RESIDUE NA A 301
2AC2SOFTWAREALA B:137 , ASN B:138 , LYS B:139BINDING SITE FOR RESIDUE EDO B 301
3AC3SOFTWAREALA B:38 , ASP B:136 , ASP B:162 , ASN B:163BINDING SITE FOR RESIDUE NA B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4OA8)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ala A:128 -Pro A:129
2Ala B:128 -Pro B:129

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4OA8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4OA8)

(-) Exons   (0, 0)

(no "Exon" information available for 4OA8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:214
                                                                                                                                                                                                                                                      
               SCOP domains d4oa8a_ A: automated matches                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhh.eeeeee..hhhhhhhhhhhhhhheeeeeeeee...hhhhhhhh.......hhhhhhhhhhhhhhhh....eeeeee.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oa8 A   5 SLSKQDEYLNKLFAVDTEGALKAHKTAPSELRMAQLGTVEGQMLQLLIRMAGIHSIVEVGTCVGFSAICMAHALPSKGHIYTIEKDYENVVTANQNIVNCKLEDKITVLHGEALAQLNTLKEMAPFDMIFIDANKSSYLAYLNWAKMYIRKGGLIVADNTFLFGSVFDEHPTEKVSSNAHASMRAFNDELANKEKYLSTIIPTSEGMMVSIKLT 218
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214    


Chain B from PDB  Type:PROTEIN  Length:213
                                                                                                                                                                                                                                                     
               SCOP domains d4oa8b_ B: automated matches                                                                                                                                                                                          SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh...hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhh.eeeeee..hhhhhhhhhhhhhhheeeeeeeee...hhhhhhhh.......hhhhhhhhhhhhhhhh....eeeeee.....eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4oa8 B   6 LSKQDEYLNKLFAVDTEGALKAHKTAPSELRMAQLGTVEGQMLQLLIRMAGIHSIVEVGTCVGFSAICMAHALPSKGHIYTIEKDYENVVTANQNIVNCKLEDKITVLHGEALAQLNTLKEMAPFDMIFIDANKSSYLAYLNWAKMYIRKGGLIVADNTFLFGSVFDEHPTEKVSSNAHASMRAFNDELANKEKYLSTIIPTSEGMMVSIKLT 218
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4OA8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4OA8)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/TrEMBL
        Q2GKC7_ANAPZ | Q2GKC7: 4oa5

(-) Related Entries Specified in the PDB File

4oa5 SAD-IODIDE PHASED BOUND TO SAH. RELATED ID: SSGCID-ANPHA.01233.A RELATED DB: TARGETTRACK