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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CBS PAIR OF A PUTATIVE D-ARABINOSE 5-PHOSPHATE ISOMERASE FROM METHYLOCOCCUS CAPSULATUS IN COMPLEX WITH CMP-KDO
 
Authors :  I. G. Shabalin, D. R. Cooper, I. A. Shumilin, M. D. Zimmerman, K. A. Major J. Hammonds, B. S. Hillerich, A. Nawar, J. Bonanno, R. Seidel, S. C. Alm W. Minor, New York Structural Genomics Research Consortium (N
Date :  02 Jan 14  (Deposition) - 22 Jan 14  (Release) - 22 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Psi-Biology, New York Structural Genomics Research Consortium, Nysgrc, Cbs Pair, Cmp-Kdo Binding, Cmp-Kdo, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. G. Shabalin, D. R. Cooper, I. A. Shumilin, M. D. Zimmerman, K. A. Majorek, J. Hammonds, B. S. Hillerich, A. Nawar, J. Bonanno, R. Seidel, S. C. Almo, W. Minor
Crystal Structure And Kinetic Properties Of D-Arabinose 5-Phosphate Isomerase From Methylococcus Capsulatus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ARABINOSE 5-PHOSPHATE ISOMERASE
    Chains: A, B
    EC Number: 5.3.1.13
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSGC-HIS
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: CBS PAIR (UNP RESIDUES 201-330)
    Gene: LOCUS TAG MCA0746, MCA0746
    Organism Scientific: METHYLOCOCCUS CAPSULATUS
    Organism Taxid: 243233
    Strain: BATH
    Synonym: API

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric/Biological Unit (3, 15)
No.NameCountTypeFull Name
1CMK2Ligand/IonCYTIDINE 5'-MONOPHOSPHATE 3-DEOXY-BETA-D-GULO-OCT-2-ULO-PYRANOSONIC ACID
2GOL1Ligand/IonGLYCEROL
3MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:201 , VAL A:254 , THR A:256 , GLY A:258 , ASP A:259 , ARG A:261 , ARG A:262 , THR A:280 , CYS A:283 , VAL A:284 , ILE A:304 , ASN A:305 , ALA A:306 , PRO A:308 , HOH A:574 , HOH A:579 , HOH A:580 , HOH A:581 , HOH A:582 , HOH A:583 , HOH A:584 , HOH A:587 , LYS B:239 , LEU B:240 , GLY B:241 , ASP B:258 , ASN B:321 , HIS B:323BINDING SITE FOR RESIDUE CMK A 401
2AC2SOFTWAREARG B:203 , LYS B:303 , ARG B:304 , CMK B:402BINDING SITE FOR RESIDUE GOL B 401
3AC3SOFTWARELYS A:238 , ASN A:320 , HIS A:322 , HOH A:578 , ARG B:203 , VAL B:255 , THR B:257 , GLY B:259 , ASP B:260 , ARG B:262 , ARG B:263 , THR B:281 , CYS B:284 , VAL B:285 , ARG B:304 , ILE B:305 , ASN B:306 , ALA B:307 , PRO B:309 , GOL B:401 , HOH B:515 , HOH B:530 , HOH B:573 , HOH B:580 , HOH B:581 , HOH B:585 , HOH B:591BINDING SITE FOR RESIDUE CMK B 402

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4O9K)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:130
                                                                                                                                                                  
               SCOP domains d4o9ka_ A: automated matches                                                                                                       SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh.hhhhh.eee...hhhhhhhhhhhhh..eeeee.....eeeeeehhhhhhhhh........hhhhh.......ee...hhhhhhhhhhhhh..eeeeee..eeeeeeehhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o9k A 201 GRRLLTFVRDImHTGDDTPVIGLEASVRDALLEmTAKKLGmTAIVDGAGTIQGVFTDGDLRRLLEKAQDIHATPITAVmTRSCVTVEGSLLAAEAVRImEQKRINALPVVENGRLIGAINmHDLLRAGVL 330
                                   210 |     220       230   |   240|      250       260       270       280       290       300       310       320|      330
                                     212-MSE               234-MSE  |                                   279-MSE             299-MSE               321-MSE     
                                                                  241-MSE                                                                                     


Chain B from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains d4o9kb_ B: automated matches                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhee.hhh.eee...hhhhhhhhhhhhh..eeeee.....eeeeeehhhhhhhhh........hhhhh.......ee...hhhhhhhhhhhhh..eeeeee..eeeeeeehhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o9k B 203 RLLTFVRDImHTGDDTPVIGLEASVRDALLEmTAKKLGmTAIVDGAGTIQGVFTDGDLRRLLEKAQDIHATPITAVmTRSCVTVEGSLLAAEAVRImEQKRINALPVVENGRLIGAINmHDLLRAGVL 331
                                   212       222       233 |     243       253       263       273      |283       293      |303       313       323        
                                   212-MSE           230|  |      |                                   280-MSE             300-MSE               322-MSE     
                                                      232  |      |                                                                                         
                                                         235-MSE  |                                                                                         
                                                                242-MSE
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 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

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(-) Gene Ontology  (4, 4)

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