4O9D - JenaLib

Title :   STRUCTURE OF DOS1 PROPELLER

Authors :   C. Kuscu, T. Schalch, L. Joshua-Tor

Date :   02 Jan 14 (Deposition) - 22 Jan 14 (Release) - 26 Feb 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B
Biol. Unit 1: B  (1x)
Biol. Unit 2: A  (1x)

Keywords :   Propeller, Heterochromatin Formation, Rik1, Dos2, Transcription, Gene Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Kuscu, M. Zaratiegui, H. S. Kim, D. A. Wah, R. A. Martienssen, T. Schalch, L. Joshua-Tor
Crl4-Like Clr4 Complex In Schizosaccharomyces Pombe Depends On An Exposed Surface Of Dos1 For Heterochromatin Silencing
Proc. Natl. Acad. Sci. Usa V. 111 1795 2014
PubMed-ID: 24449894 | Reference-DOI: 10.1073/PNAS.1313096111

Compounds

Molecule 1 - RIK1-ASSOCIATED FACTOR 1
	Chains	:	B, A
	Engineered	:	YES
	Expression System	:	TRICHOPLUSIA NI
	Expression System Strain	:	HI5
	Expression System Taxid	:	7111
	Expression System Vector Type	:	PFL
	Fragment	:	DOS1WD
	Gene	:	RAF1, CLR8, CMC1, DOS1, SPCC613.12C
	Organism Common	:	FISSION YEAST
	Organism Scientific	:	SCHIZOSACCHAROMYCES POMBE
	Organism Taxid	:	284812
	Strain	:	972 / ATCC 24843
	Synonym	:	CRYPTIC LOCI REGULATOR 8, DE-LOCALIZATION OF SWI6 PROTEIN 1

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:		B
Biological Unit 2 (1x)	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (2, 10)

Asymmetric Unit (2, 10)

No.	Name	Count	Type	Full Name
1	CL	1	Ligand/Ion	CHLORIDE ION
2	EDO	9	Ligand/Ion	1,2-ETHANEDIOL

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EDO	4	Ligand/Ion	1,2-ETHANEDIOL

Biological Unit 2 (1, 5)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EDO	5	Ligand/Ion	1,2-ETHANEDIOL

Sites (10, 10)

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	LYS B:254 , ILE B:274 , THR B:281 , MET B:328 , ILE B:632 , HOH B:903	BINDING SITE FOR RESIDUE EDO B 701
02	AC2	SOFTWARE	LYS B:290 , ASP B:320 , HOH B:866	BINDING SITE FOR RESIDUE EDO B 702
03	AC3	SOFTWARE	ILE A:569 , ASN A:584 , GLU A:587 , EDO A:704 , PHE B:581 , GLN B:583 , ASN B:584	BINDING SITE FOR RESIDUE EDO B 703
04	AC4	SOFTWARE	SER A:378 , SER B:378 , ASN B:380	BINDING SITE FOR RESIDUE EDO B 704
05	AC5	SOFTWARE	ASN B:440 , VAL B:480	BINDING SITE FOR RESIDUE CL B 705
06	AC6	SOFTWARE	ASN A:249 , CYS A:252 , SER A:598 , GLU A:599 , ASP A:600 , HOH A:951	BINDING SITE FOR RESIDUE EDO A 701
07	AC7	SOFTWARE	SER A:406 , ASP A:407 , HOH A:801	BINDING SITE FOR RESIDUE EDO A 702
08	AC8	SOFTWARE	SER A:378 , ASN A:380 , LEU B:376 , THR B:377 , SER B:378	BINDING SITE FOR RESIDUE EDO A 703
09	AC9	SOFTWARE	THR A:586 , GLU A:587 , PHE B:581 , EDO B:703	BINDING SITE FOR RESIDUE EDO A 704
10	BC1	SOFTWARE	LEU A:221 , MET A:222 , ASP A:223	BINDING SITE FOR RESIDUE EDO A 705

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:391
                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh.eeeeee......eeeeee.....eeeeee.....eeeee....eeee....eee.....eee..eeeeee.....eeeeee....eeeee....eeeee......eeeeee.....eeeee....eeeeee......eeeeeee.hhhhhhh..eeeeeeeehhhhh...eeeeeeeehhhheeeeeeeeee....eeeee......eeeeeee.....eeeeeee....eeeeeee....eeeeeeee....eeeeee.....eeeeee...eeeeee........eeee...........eeee......eeee....eeeee.......eeeeeee....eeeeee.....eeeeee...eeeeee........ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o9d A 221 LMDGESVFFLKPWKHFNETSGDTVCVAYNPLCEKFALGSTAQGNLWIGDFHSETIQSLESHYKLNQVGEKEYSTISDLCFSKGNLFLYTGAFDNAVKVWDMEGNLCGIFNAPTDYIHKLALSDDDLLAVACKNGYGYLLSTDNSTGEILTSANLIYPEALEKGYSASLIEFSNFLGRSSDKVIIGYDSFHTSNNRGCLALFDASTASFVQKFNTADEAFTSLYMHPSQVGFVASSNTLSNGRVYYLDTRMYKVCLNFTTTQKDINHATISNSGILVTSSGTDNQTFVWDSRKPDKPLSLLKHGKTKMIAGINMAQWQPKGNLFVTGGSDGIVKVWDLRLNNPFIQNFTEMNSAITYGGFSEDASKLTVCCVGGDVNMYSLGNKFGEFRIIE 633
                                   230       240       250       260 ||    277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       548       558       568       578       588       598       608       618|      632 
                                                                   262|                                                                                                                                                                                                                                                                      535|                                                                    618|          
                                                                    270                                                                                                                                                                                                                                                                       547                                                                     623

Chain B from PDB  Type:PROTEIN  Length:392
                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhh.eeeeee......eeeeee.....eeeeee............eeeee....eeee....eee.....eee..eeeeee.....eeeeee....eeeee....eeeee......eeeeee.....eeeee....eeeeee......eeeeeee.hhhhhhh..eeeeeeee........eeeeeee.......eeeeee....eeeee......eeeeeee.....eeeeeee....eeeeeee....eeeeeeee....eeeeee.....eeeeee...eeeeee........eeee..........eeee......eeee....eeeee.......eeeeeee....eeeeee.....eeeeee....eeeee.........eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o9d B 225 ESVFFLKPWKHFNETSGDTVCVAYNPLCEKFALGSTAQDGAYNRLGNLWIGDFHSETIQSLESHYKLNQVGEKEYSTISDLCFSKGNLFLYTGAFDNAVKVWDMEGNLCGIFNAPTDYIHKLALSDDDLLAVACKNGYGYLLSTDNSTGEILTSANLIYPEALEKGYSASLIEFSNFLGRSSDKVIIGYDSFHTNRGCLALFDASTASFVQKFNTADEAFTSLYMHPSQVGFVASSNTLSNGRVYYLDTRMYKVCLNFTTTQKDINHATISNSGILVTSSGTDNQTFVWDSRKPDKPLSLLKHGKTKMAGINMAQWQPKGNLFVTGGSDGIVKVWDLRLNNPFIQNFTEMNSAITYGGFSEDASKLTVCCVGGDVNMYSLGGNKFGEFRIIE 633
                                   234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414   ||  426       436       446       456       466       476       486       496       506       516       526       548       558       568       578       588       598       608       618||     631  
                                                                                                                                                                                                                           418|                                                                                                              534|                                                                     619|          
                                                                                                                                                                                                                            421                                                                                                               547                                                                      623

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (24, 24)

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