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(-) Description

Title :  STRUCTURE OF PF2046
 
Authors :  J. Su, Z. -J. Liu
Date :  30 Dec 13  (Deposition) - 30 Apr 14  (Release) - 30 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,E  (1x)
Biol. Unit 2:  C,D,F  (1x)
Keywords :  Low Resolution Diffraction, Pf2046, B-Factorsharpening, Homodimer Of Trimers, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Su, Y. Li, N. Shaw, W. H. Zhou, M. Zhang, H. Xu, B. -C. Wang, Z. -J. Liu
Crystal Structure Of A Novel Non-Pfam Protein Pf2046 Solved Using Low Resolution B-Factor Sharpening And Multi-Crystal Averaging Methods
Protein Cell V. 1 453 2010
PubMed-ID: 21203960  |  Reference-DOI: 10.1007/S13238-010-0045-7

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN PF2046
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PF2046
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 186497
    Strain: DSM 3638

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB  E 
Biological Unit 2 (1x):   CD F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 18)

Asymmetric Unit (1, 18)
No.NameCountTypeFull Name
1MSE18Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 9)
No.NameCountTypeFull Name
1MSE9Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 9)
No.NameCountTypeFull Name
1MSE9Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4O8U)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4O8U)

(-) Cis Peptide Bonds  (14, 14)

Asymmetric Unit
No.Residues
1Thr A:16 -Gly A:17
2Lys A:40 -Pro A:41
3Thr B:16 -Gly B:17
4Lys B:40 -Pro B:41
5Thr C:16 -Gly C:17
6Lys C:40 -Pro C:41
7Thr D:16 -Gly D:17
8Lys D:40 -Pro D:41
9Arg D:226 -Arg D:227
10Thr E:16 -Gly E:17
11Lys E:40 -Pro E:41
12Thr F:16 -Gly F:17
13Lys F:40 -Pro F:41
14Gly F:92 -Gly F:93

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O8U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O8U)

(-) Exons   (0, 0)

(no "Exon" information available for 4O8U)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee..eee.....eeee.eeeeeeee.......eeeeee..........hhhhhhhhhhhhhhhhhhh..eee........hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.eee.hhhhhhhhhhhhhhhhhhhhhhhhh......eeeee....eeeeee..eeeeee.hhhhh..eeeee.......eeeeee.......eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o8u A   9 SRIVAADTGGAVLDETFEPIGLIATVAVLVEKPYRSAKEVmVKYANPYDYDLTGRQAIRDEVLLAIELARKVKPDVIHLDSTLGGIELRKLDEPTIDALGISDKGKEVWKELSKDLQPLARKFWEETNIEIVAIGKSSVPVRIAEIYAGIYSAKWGIENVEKEGHLIIGLPRYmEVNIKDGKIIGRSLDPREGGLYGSAEVSVPEGVKWEIYPNPVARRFmIFEIFS 235
                                    18        28        38        48|       58        68        78        88        98       108       118       128       138       148       158       168       178   |   188       198       208       218       228|      
                                                                   49-MSE                                                                                                                              182-MSE                                        229-MSE  


Chain B from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eee.....eeee.eeeeeee........eeeeee..........hhhhhhhhhhhhhhhhhhh..eee........hhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh.eee.hhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee....eeeeee..eeeeee.hhhhh..eeeee.......eeeeee.......eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o8u B   9 SRIVAADTGGAVLDETFEPIGLIATVAVLVEKPYRSAKEVmVKYANPYDYDLTGRQAIRDEVLLAIELARKVKPDVIHLDSTLGGIELRKLDEPTIDALGISDKGKEVWKELSKDLQPLARKFWEETNIEIVAIGKSSVPVRIAEIYAGIYSAKWGIENVEKEGHLIIGLPRYmEVNIKDGKIIGRSLDPREGGLYGSAEVSVPEGVKWEIYPNPVARRFmIFEIFS 235
                                    18        28        38        48|       58        68        78        88        98       108       118       128       138       148       158       168       178   |   188       198       208       218       228|      
                                                                   49-MSE                                                                                                                              182-MSE                                        229-MSE  


Chain C from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eee.....eeee.eeeeeee........eeeeee..........hhhhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh.eee.hhhhhhhhhhhhhhhhhhhhhhhhh......eeeee....eeeeee..eeeeee.hhhhh..eeeee.......eeeeee.......eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o8u C   9 SRIVAADTGGAVLDETFEPIGLIATVAVLVEKPYRSAKEVmVKYANPYDYDLTGRQAIRDEVLLAIELARKVKPDVIHLDSTLGGIELRKLDEPTIDALGISDKGKEVWKELSKDLQPLARKFWEETNIEIVAIGKSSVPVRIAEIYAGIYSAKWGIENVEKEGHLIIGLPRYmEVNIKDGKIIGRSLDPREGGLYGSAEVSVPEGVKWEIYPNPVARRFmIFEIFS 235
                                    18        28        38        48|       58        68        78        88        98       108       118       128       138       148       158       168       178   |   188       198       208       218       228|      
                                                                   49-MSE                                                                                                                              182-MSE                                        229-MSE  


Chain D from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eee.....eeee.eeeeeee........eeeeee...........hhhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.eee.hhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee....eeeeee..eeeeee.hhhhh..eeeee.......eeeeee.......eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o8u D   9 SRIVAADTGGAVLDETFEPIGLIATVAVLVEKPYRSAKEVmVKYANPYDYDLTGRQAIRDEVLLAIELARKVKPDVIHLDSTLGGIELRKLDEPTIDALGISDKGKEVWKELSKDLQPLARKFWEETNIEIVAIGKSSVPVRIAEIYAGIYSAKWGIENVEKEGHLIIGLPRYmEVNIKDGKIIGRSLDPREGGLYGSAEVSVPEGVKWEIYPNPVARRFmIFEIFS 235
                                    18        28        38        48|       58        68        78        88        98       108       118       128       138       148       158       168       178   |   188       198       208       218       228|      
                                                                   49-MSE                                                                                                                              182-MSE                                        229-MSE  


Chain E from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eee.....eeee.eeeeeee........eeeeee..........hhhhhhhhhhhhhhhhhhh..eee........hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh.eee.hhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee....eeeeee..eeeeee.hhhhh..eeeee.......eeeeee.......eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o8u E   9 SRIVAADTGGAVLDETFEPIGLIATVAVLVEKPYRSAKEVmVKYANPYDYDLTGRQAIRDEVLLAIELARKVKPDVIHLDSTLGGIELRKLDEPTIDALGISDKGKEVWKELSKDLQPLARKFWEETNIEIVAIGKSSVPVRIAEIYAGIYSAKWGIENVEKEGHLIIGLPRYmEVNIKDGKIIGRSLDPREGGLYGSAEVSVPEGVKWEIYPNPVARRFmIFEIFS 235
                                    18        28        38        48|       58        68        78        88        98       108       118       128       138       148       158       168       178   |   188       198       208       218       228|      
                                                                   49-MSE                                                                                                                              182-MSE                                        229-MSE  


Chain F from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee..eee.....eeee.eeeeeee........eeeeee...........hhhhhhhhhhhhhhhhhh..eeee.......hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.eee.hhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee....eeeeee..eeeeee.hhhhh..eeeee.......eeeeee.......eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o8u F   9 SRIVAADTGGAVLDETFEPIGLIATVAVLVEKPYRSAKEVmVKYANPYDYDLTGRQAIRDEVLLAIELARKVKPDVIHLDSTLGGIELRKLDEPTIDALGISDKGKEVWKELSKDLQPLARKFWEETNIEIVAIGKSSVPVRIAEIYAGIYSAKWGIENVEKEGHLIIGLPRYmEVNIKDGKIIGRSLDPREGGLYGSAEVSVPEGVKWEIYPNPVARRFmIFEIFS 235
                                    18        28        38        48|       58        68        78        88        98       108       118       128       138       148       158       168       178   |   188       198       208       218       228|      
                                                                   49-MSE                                                                                                                              182-MSE                                        229-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4O8U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4O8U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4O8U)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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  Cis Peptide Bonds
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        Q8TZE9_PYRFU | Q8TZE9: 5chi

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