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(-) Description

Title :  CRYSTAL STRUCTURE OF A 3-OXOACYL-[ACYL-CARRIER PROTEIN] REDUCTASE (EC 1.1.1.100) FROM BRUCELLA SUIS
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  23 Dec 13  (Deposition) - 15 Jan 14  (Release) - 15 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.85
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Dehydrogenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. M. Dranow, J. W. Fairman, T. E. Edwards, D. Lorimer
Crystal Structure Of A 3-Oxoacyl-[Acyl-Carrier Protein] Reductase (Ec 1. 1. 1. 100) From Brucella Suis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - OXIDOREDUCTASE, SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY
    Chains: A, B, C, D
    EC Number: 1.1.1.100
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: BSUIS_A0748
    Organism Scientific: BRUCELLA SUIS
    Organism Taxid: 470137
    Strain: ATCC 23445/NCTC 10510

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 14)

Asymmetric/Biological Unit (2, 14)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2GOL13Ligand/IonGLYCEROL

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLN A:4 , LYS A:5 , ASP A:27 , GLY A:28 , HOH A:457 , HOH A:513BINDING SITE FOR RESIDUE GOL A 301
02AC2SOFTWARELYS A:5 , PHE A:29 , ASP A:77 , VAL A:78 , SER A:126 , ARG A:171 , ALA A:212 , SER A:213 , ASP A:214 , HOH A:463 , HOH A:470BINDING SITE FOR RESIDUE GOL A 302
03AC3SOFTWARELEU A:70 , GLU A:71 , LYS A:72 , TRP A:73 , GLY A:74BINDING SITE FOR RESIDUE GOL A 303
04AC4SOFTWAREGLY A:48 , GLU A:188 , HOH A:481 , HOH A:550BINDING SITE FOR RESIDUE EDO A 304
05AC5SOFTWAREPHE A:138 , ASN A:223 , ARG A:225 , VAL B:234 , GOL B:303 , HOH B:451 , HOH B:531BINDING SITE FOR RESIDUE GOL B 301
06AC6SOFTWAREILE B:3 , GLN B:4 , LYS B:5 , ASP B:27 , GLY B:28 , PHE B:29 , HOH B:475BINDING SITE FOR RESIDUE GOL B 302
07AC7SOFTWAREVAL A:234 , PHE B:138 , ASN B:223 , ARG B:225 , GOL B:301 , HOH B:434 , HOH B:530BINDING SITE FOR RESIDUE GOL B 303
08AC8SOFTWARELYS B:5 , PHE B:29 , ASP B:77 , VAL B:78 , VAL B:128 , ARG B:171 , ALA B:212 , SER B:213 , ASP B:214 , HOH B:428 , HOH B:461BINDING SITE FOR RESIDUE GOL B 304
09AC9SOFTWARELYS C:5 , PHE C:29 , ASP C:77 , VAL C:78 , SER C:126 , GLY C:127 , VAL C:128 , ARG C:171 , ALA C:212 , SER C:213 , ASP C:214 , HOH C:490 , HOH C:546BINDING SITE FOR RESIDUE GOL C 301
10BC1SOFTWAREILE C:3 , GLN C:4 , LYS C:5 , ASP C:27 , GLY C:28 , PHE C:29 , HOH C:482BINDING SITE FOR RESIDUE GOL C 302
11BC2SOFTWAREVAL C:234 , HOH C:464 , HOH C:506 , PHE D:138 , ASN D:223 , ARG D:225 , GOL D:302BINDING SITE FOR RESIDUE GOL C 303
12BC3SOFTWARELYS D:5 , PHE D:29 , ASP D:77 , VAL D:78 , SER D:126 , GLY D:127 , VAL D:128 , ARG D:171 , ALA D:212 , SER D:213 , ASP D:214 , HOH D:449 , HOH D:502BINDING SITE FOR RESIDUE GOL D 301
13BC4SOFTWAREASN C:223 , ARG C:225 , GOL C:303 , VAL D:234 , HOH D:485 , HOH D:506BINDING SITE FOR RESIDUE GOL D 302
14BC5SOFTWARELYS D:5 , ASP D:27 , GLY D:28 , HOH D:471BINDING SITE FOR RESIDUE GOL D 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4O6V)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4O6V)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O6V)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O6V)

(-) Exons   (0, 0)

(no "Exon" information available for 4O6V)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:229
                                                                                                                                                                                                                                                                     
               SCOP domains d4o6va_ A: automated matches                                                                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhhh.eeeeee..hhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhh...eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee...........hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee........hhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o6v A   3 IQKVAIITAGGSGMGAASARRLAQDGFAVAILSSSGKGEALAKELGGIGVTGSNQSNDDLQKLVDQTLEKWGRIDVLVNSAGRAPILEITDEDWHKGMDTYFLNAVRPARLVVPAMQKQKSGVIINISTAWAFEPSAMFPTSAVFRAGLASFTKIFADTYAAENIRMNNVLPGWIDSLPTTEERRESVPMQRYGKSEEIAATVSFLASDGAAYITGQNLRVDGGLTRSV 234
                                    12        22        32        42        52        62        72        82 ||     95       105       115       125       135       145       155       165       175       185       195       205       215       225         
                                                                                                            84|                                                                                                                                                  
                                                                                                             88                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:232
                                                                                                                                                                                                                                                                        
               SCOP domains d4o6vb_ B: automated matches                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhhh.eeeeee..hhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee...........hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee........hhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o6v B   3 IQKVAIITAGGSGMGAASARRLAQDGFAVAILSSSGKGEALAKELGGIGVTGSNQSNDDLQKLVDQTLEKWGRIDVLVNSAGHGPRAPILEITDEDWHKGMDTYFLNAVRPARLVVPAMQKQKSGVIINISTAWAFEPSAMFPTSAVFRAGLASFTKIFADTYAAENIRMNNVLPGWIDSLPTTEERRESVPMQRYGKSEEIAATVSFLASDGAAYITGQNLRVDGGLTRSV 234
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232  


Chain C from PDB  Type:PROTEIN  Length:235
                                                                                                                                                                                                                                                                           
               SCOP domains d4o6vc_ C: automated matches                                                                                                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee...hhhhhhhhhhhhhhh.eeeeee..hhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee...........hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee........hhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o6v C   0 HMTIQKVAIITAGGSGMGAASARRLAQDGFAVAILSSSGKGEALAKELGGIGVTGSNQSNDDLQKLVDQTLEKWGRIDVLVNSAGHGPRAPILEITDEDWHKGMDTYFLNAVRPARLVVPAMQKQKSGVIINISTAWAFEPSAMFPTSAVFRAGLASFTKIFADTYAAENIRMNNVLPGWIDSLPTTEERRESVPMQRYGKSEEIAATVSFLASDGAAYITGQNLRVDGGLTRSV 234
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229     


Chain D from PDB  Type:PROTEIN  Length:232
                                                                                                                                                                                                                                                                        
               SCOP domains d4o6vd_ D: automated matches                                                                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhhh.eeeeee..hhhhhhhhhh..eeee....hhhhhhhhhhhhhhhhh...eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee...........hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee........hhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o6v D   3 IQKVAIITAGGSGMGAASARRLAQDGFAVAILSSSGKGEALAKELGGIGVTGSNQSNDDLQKLVDQTLEKWGRIDVLVNSAGHGPRAPILEITDEDWHKGMDTYFLNAVRPARLVVPAMQKQKSGVIINISTAWAFEPSAMFPTSAVFRAGLASFTKIFADTYAAENIRMNNVLPGWIDSLPTTEERRESVPMQRYGKSEEIAATVSFLASDGAAYITGQNLRVDGGLTRSV 234
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4O6V)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4O6V)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4O6V)

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