Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF RNASE L IN COMPLEX WITH 2-5A AND AMP-PNP
 
Authors :  H. Huang, E. Zeqiraj, D. F. Ceccarelli, F. Sicheri
Date :  16 Dec 13  (Deposition) - 05 Feb 14  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Ankyrin Repeat-Kinase-Rnase, Rna Cleavage, 2-5A, Transferase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Huang, E. Zeqiraj, B. Dong, B. K. Jha, N. M. Duffy, S. Orlicky, N. Thevakumaran, M. Talukdar, M. C. Pillon, D. F. Ceccarelli, L. C. Wan Y. C. Juang, D. Y. Mao, C. Gaughan, M. A. Brinton, A. A. Perelygin, I. Kourinov, A. Guarne, R. H. Silverman, F. Sicheri
Dimeric Structure Of Pseudokinase Rnase L Bound To 2-5A Reveals A Basis For Interferon-Induced Antiviral Activity.
Mol. Cell V. 53 221 2014
PubMed-ID: 24462203  |  Reference-DOI: 10.1016/J.MOLCEL.2013.12.025

(-) Compounds

Molecule 1 - RIBONUCLEASE L
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 21-732
    Gene: RNASEL
    Organism Common: PIG
    Organism Scientific: SUS SCROFA
    Organism Taxid: 9823

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 16)

Asymmetric Unit (3, 16)
No.NameCountTypeFull Name
125L4Ligand/Ion[[(2R,3R,4R,5R)-5-(6-AMINOPURIN-9-YL)-4-[[(2R,3R,4R,5R)-5-(6-AMINOPURIN-9-YL)-4-[[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL]OXY-3-HYDROXY-OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL]OXY-3-HYDROXY-OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL] PHOSPHONO HYDROGEN PHOSPHATE
2ANP4Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
3MG8Ligand/IonMAGNESIUM ION
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
125L2Ligand/Ion[[(2R,3R,4R,5R)-5-(6-AMINOPURIN-9-YL)-4-[[(2R,3R,4R,5R)-5-(6-AMINOPURIN-9-YL)-4-[[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL]OXY-3-HYDROXY-OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL]OXY-3-HYDROXY-OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL] PHOSPHONO HYDROGEN PHOSPHATE
2ANP2Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
3MG-1Ligand/IonMAGNESIUM ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
125L2Ligand/Ion[[(2R,3R,4R,5R)-5-(6-AMINOPURIN-9-YL)-4-[[(2R,3R,4R,5R)-5-(6-AMINOPURIN-9-YL)-4-[[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL]OXY-3-HYDROXY-OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL]OXY-3-HYDROXY-OXOLAN-2-YL]METHOXY-HYDROXY-PHOSPHORYL] PHOSPHONO HYDROGEN PHOSPHATE
2ANP2Ligand/IonPHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:370 , THR A:372 , ALA A:373 , ILE A:377 , ALA A:388 , LYS A:390 , ALA A:433 , CYS A:435 , THR A:438 , GLN A:486 , ASN A:487 , LEU A:489 , ASP A:500 , ASP A:502 , MG A:902 , MG A:903 , HOH A:1046 , HOH A:1084BINDING SITE FOR RESIDUE ANP A 901
02AC2SOFTWAREASP A:500 , ASP A:502 , ANP A:901 , MG A:903BINDING SITE FOR RESIDUE MG A 902
03AC3SOFTWAREASN A:487 , ASP A:500 , ANP A:901 , MG A:902 , HOH A:1046BINDING SITE FOR RESIDUE MG A 903
04AC4SOFTWARETRP A:56 , TRP A:58 , SER A:63 , GLN A:66 , LYS A:87 , ASN A:89 , ILE A:99 , ASN A:122 , PHE A:124 , GLU A:129 , TYR A:133 , ARG A:153 , LYS A:164 , HOH A:1002 , HOH A:1020 , HOH A:1024 , HOH A:1028 , HOH A:1035 , HOH A:1052 , HOH A:1064 , HOH A:1112 , HOH A:1222 , ARG B:307 , ARG B:308 , TYR B:310 , ARG B:353 , PHE B:362 , HOH B:1089BINDING SITE FOR RESIDUE 25L A 904
05AC5SOFTWAREALA B:370 , THR B:372 , ALA B:373 , ILE B:377 , ALA B:388 , LYS B:390 , ALA B:433 , CYS B:435 , THR B:438 , GLN B:486 , ASN B:487 , LEU B:489 , ASP B:500 , ASP B:502 , MG B:902 , MG B:903 , HOH B:1023 , HOH B:1076BINDING SITE FOR RESIDUE ANP B 901
06AC6SOFTWAREARG B:398 , ASP B:500 , ASP B:502 , ANP B:901 , MG B:903BINDING SITE FOR RESIDUE MG B 902
07AC7SOFTWAREASN B:487 , ASP B:500 , ANP B:901 , MG B:902BINDING SITE FOR RESIDUE MG B 903
08AC8SOFTWAREARG A:307 , ARG A:308 , TYR A:310 , ARG A:353 , PHE A:362 , HOH A:1071 , HOH A:1110 , TRP B:56 , TRP B:58 , SER B:63 , GLN B:66 , LYS B:87 , ASN B:89 , ILE B:99 , ASP B:120 , ASN B:122 , PHE B:124 , GLU B:129 , TYR B:133 , ARG B:153 , LYS B:164 , HOH B:1003 , HOH B:1012 , HOH B:1102 , HOH B:1122 , HOH B:1140 , HOH B:1165 , HOH B:1233BINDING SITE FOR RESIDUE 25L B 904
09AC9SOFTWAREALA C:370 , THR C:372 , ALA C:373 , ILE C:377 , ALA C:388 , LYS C:390 , ALA C:433 , CYS C:435 , THR C:438 , GLN C:486 , ASN C:487 , LEU C:489 , ASP C:500 , ASP C:502 , MG C:902 , MG C:903 , HOH C:1011 , HOH C:1023 , HOH C:1056 , HOH C:1072 , HOH C:1194BINDING SITE FOR RESIDUE ANP C 901
10BC1SOFTWAREASP C:500 , ASP C:502 , ANP C:901 , MG C:903 , HOH C:1011BINDING SITE FOR RESIDUE MG C 902
11BC2SOFTWAREASN C:487 , ASP C:500 , ANP C:901 , MG C:902BINDING SITE FOR RESIDUE MG C 903
12BC3SOFTWARETRP C:56 , TRP C:58 , SER C:63 , GLN C:66 , LYS C:87 , ASN C:89 , ASP C:120 , ASN C:122 , PHE C:124 , GLU C:129 , TYR C:133 , ARG C:153 , LYS C:164 , HOH C:1003 , HOH C:1005 , HOH C:1007 , HOH C:1021 , HOH C:1048 , HOH C:1052 , HOH C:1059 , HOH C:1087 , HOH C:1100 , HOH C:1108 , HOH C:1148 , HOH C:1208 , HOH C:1216 , ARG D:307 , ARG D:308 , TYR D:310 , ARG D:353 , PHE D:362 , SER D:426 , HOH D:1012BINDING SITE FOR RESIDUE 25L C 904
13BC4SOFTWAREALA D:370 , THR D:372 , ALA D:373 , ILE D:377 , ALA D:388 , LYS D:390 , ARG D:398 , ALA D:433 , CYS D:435 , THR D:438 , GLN D:486 , ASN D:487 , LEU D:489 , ASP D:500 , ASP D:502 , MG D:902 , MG D:903 , HOH D:1132BINDING SITE FOR RESIDUE ANP D 901
14BC5SOFTWAREGLN D:486 , ASN D:487 , ASP D:500 , ANP D:901 , MG D:903BINDING SITE FOR RESIDUE MG D 902
15BC6SOFTWAREASP D:482 , ASN D:487 , ASP D:500 , ANP D:901 , MG D:902BINDING SITE FOR RESIDUE MG D 903
16BC7SOFTWAREARG C:307 , TYR C:310 , ARG C:353 , PHE C:362 , HOH C:1130 , TRP D:56 , TRP D:58 , SER D:63 , GLN D:66 , LYS D:87 , ASN D:89 , ASN D:122 , PHE D:124 , GLU D:129 , TYR D:133 , ARG D:153 , LYS D:164 , HOH D:1003 , HOH D:1041 , HOH D:1055 , HOH D:1155 , HOH D:1156 , HOH D:1189 , HOH D:1205 , HOH D:1232BINDING SITE FOR RESIDUE 25L D 904

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4O1P)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Pro B:566 -Gly B:567

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4O1P)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4O1P)

(-) Exons   (0, 0)

(no "Exon" information available for 4O1P)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:672
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhh.hhhhhhhhhhh.............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhh.hhhhhhhhhhh..........hhhhhh......hhhhhhhhh.hhhhhhhhhhh.............hhhhhhhhh.hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh.hhhhhhhhhh..............hhhhhhhhh.hhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhh........hhhhhhhhhhh.......ee...hhh.eee......eeeeee..eeeeeeeee..hhhhhhhhhhhhh.........eeeeee...eeeeeee...eehhhhhhhh.........hhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee...hhhhhhhhhhhhhhhhhhhhh....hhhhhhh.hhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh....hhhhhhhh.........hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4o1p A  22 SLEEMLTQAVQEADIEQVRQLLERGADANFQEEEWGWSPLHSAVQMDSEDLVALLLKHGADPCLRKRNGATPFIIAGITGNVRLLQLLLPNVEDVNECDVNGFTAFMEAAVYGRVEALRFLYENGADVNMHRKTKQDQERIRKGGATALMDAAEKGHVGVVTILLHAMKAEVDARDNMGRNALVYALLNPDDGKAKAITRLLLDHGADVNVRGEGSKTPLILAVERKNLDLVQMLLEQEQIEVNDTDREGKTALLLAVELRLEEIAKLLCHRGASTNCGDLVAIARRNYDSDLVKFLRLHNWKPQSSRWGEALKHLHRIWRPMIGKLKIFIDEEYKIADTAEGGIYLGLYEDQEVAVKRFSEGSTRGQQEVSCLQSSRANDNVVTFYGSESDGSCLHVCLALCEYTLQEHLANHRGDAVPNEEDESARNILSSLFKAIGELHRSGYSHQDLQPQNILIDSKNGTFLADFDKSIKWAEDPQKIKRDLEALGLLVLYVVKKGDISFETLKNQSFEEVIQGSPDEETRDLIHHLFHPEDRLSSLLAHPFFWSWESRYRTLRDVGNESDIKTRNQNSRILQLLQPGTLSTSFAQWTTKIDSFVMEEMNAYQDTLGDLLKFIRNLGEHINEQKNKKMKSIIGEPSQYFQEKFPDLVMYVYTKLQNTEYMKHFPKTHN 729
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321|      342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542       552       562   ||  576       586       596       606       616  ||   628       638    || 667       677       687       697       707       717       727  
                                                                                                                                                                                                                                                                                                                                     321|                                                                                                                                                                                                                                      566|                                             619|                  643|                                                                  
                                                                                                                                                                                                                                                                                                                                      333                                                                                                                                                                                                                                       571                                              622                   663                                                                  


Chain B from PDB  Type:PROTEIN  Length:671
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh.hhhhhhhhhhh.............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhh.hhhhhhhhhhh..........hhhhhh......hhhhhhhhh.hhhhhhhhhhh.............hhhhhhhhh.hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh.hhhhhhhhhh..............hhhhhhhhh.hhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhh.........hhhhhhhhhhh.......ee...hhh.eee......eeeeee..eeeeeeeee..hhhhhhhhhhhhh.........eeeeee...eeeeeee...eehhhhhhhh.........hhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee...hhhhhhhhhhhhhhhhhhhhh....hhhhhhh.hhhhhhhh..hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh....hhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o1p B  22 SLEEMLTQAVQEADIEQVRQLLERGADANFQEEEWGWSPLHSAVQMDSEDLVALLLKHGADPCLRKRNGATPFIIAGITGNVRLLQLLLPNVEDVNECDVNGFTAFMEAAVYGRVEALRFLYENGADVNMHRKTKQDQERIRKGGATALMDAAEKGHVGVVTILLHAMKAEVDARDNMGRNALVYALLNPDDGKAKAITRLLLDHGADVNVRGEGSKTPLILAVERKNLDLVQMLLEQEQIEVNDTDREGKTALLLAVELRLEEIAKLLCHRGASTNCGDLVAIARRNYDSDLVKFLRLHKNWKPQSSRWGEALKHLHRIWRPMIGKLKIFIDEEYKIADTAEGGIYLGLYEDQEVAVKRFSEGSTRGQQEVSCLQSSRANDNVVTFYGSESDGSCLHVCLALCEYTLQEHLANHRGDAVPNEEDESARNILSSLFKAIGELHRSGYSHQDLQPQNILIDSKNGTFLADFDKSIKWAEDPQKIKRDLEALGLLVLYVVKKGDISFETLKNQSFEEVIQGSPDEETRDLIHHLFHPGEDRLSSLLAHPFFWSWESRYRTLRDVGNESDIKTRNQNSRILQLLQPSTSFAQWTTKIDSFVMEEMNAYQDTLGDLLKFIRNLGEHINEQKNKKMKSIIGEPSQYFQEKFPDLVMYVYTKLQNTEYMKHFPKTHN 729
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321||     341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561     ||574       584       594       604       614  ||   629       639   ||  668       678       688       698       708       718       728 
                                                                                                                                                                                                                                                                                                                                      322|                                                                                                                                                                                                                                       567|                                           617|                 643|                                                                  
                                                                                                                                                                                                                                                                                                                                       333                                                                                                                                                                                                                                        571                                            623                  663                                                                  


Chain C from PDB  Type:PROTEIN  Length:673
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh.hhhhhhhhhhh.............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhh.hhhhhhhhhhh..........hhhhhh......hhhhhhhhh.hhhhhhhhhhh.............hhhhhhhhh.hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh.hhhhhhhhhh..............hhhhhhhhh.hhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhh.........hhhhhhhhhhh.......ee...hhh.eee......eeeeee..eeeeeeeee..hhhhhhhhhhhhh.........eeeeee...eeeeeee...eehhhhhhhh.........hhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee...hhhhhhhhhhhhhhhhhhhhh....hhhhhhh.hhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh....hhhhhhhh.........hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o1p C  22 SLEEMLTQAVQEADIEQVRQLLERGADANFQEEEWGWSPLHSAVQMDSEDLVALLLKHGADPCLRKRNGATPFIIAGITGNVRLLQLLLPNVEDVNECDVNGFTAFMEAAVYGRVEALRFLYENGADVNMHRKTKQDQERIRKGGATALMDAAEKGHVGVVTILLHAMKAEVDARDNMGRNALVYALLNPDDGKAKAITRLLLDHGADVNVRGEGSKTPLILAVERKNLDLVQMLLEQEQIEVNDTDREGKTALLLAVELRLEEIAKLLCHRGASTNCGDLVAIARRNYDSDLVKFLRLHKNWKPQSSRWGEALKHLHRIWRPMIGKLKIFIDEEYKIADTAEGGIYLGLYEDQEVAVKRFSEGSTRGQQEVSCLQSSRANDNVVTFYGSESDGSCLHVCLALCEYTLQEHLANHRGDAVPNEEDESARNILSSLFKAIGELHRSGYSHQDLQPQNILIDSKNGTFLADFDKSIKWAEDPQKIKRDLEALGLLVLYVVKKGDISFETLKNQSFEEVIQGSPDEETRDLIHHLFHPEDRLSSLLAHPFFWSWESRYRTLRDVGNESDIKTRNQNSRILQLLQPGTLSTSFAQWTTKIDSFVMEEMNAYQDTLGDLLKFIRNLGEHINEQKNKKMKSIIGEPSQYFQEKFPDLVMYVYTKLQNTEYMKHFPKTHN 729
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321||     341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561    || 575       585       595       605       615   ||  627       637     ||666       676       686       696       706       716       726   
                                                                                                                                                                                                                                                                                                                                      322|                                                                                                                                                                                                                                      566|                                             619|                  643|                                                                  
                                                                                                                                                                                                                                                                                                                                       333                                                                                                                                                                                                                                       571                                              622                   663                                                                  


Chain D from PDB  Type:PROTEIN  Length:668
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh.hhhhhhhhhhh.............hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhh.hhhhhhhhhhh..........hhhhhh......hhhhhhhhh.hhhhhhhhhhh.............hhhhhhhh..hhhhhhhhhhhhh.........hhhhhhhhhhhhhh.hhhhhhhhhh..............hhhhhhhhh.hhhhhhhhhhh..hhhhhhhhhhhhhh.hhhhhhhhhhh.........hhhhhhhhhhh.......ee...hhh.eee......eeeeee..eeeeeeeee..hhhhhhhhhhhhh.........eeeeee...eeeeeee...eehhhhhhhh.........hhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee...hhhhhhhhhhhhhhhhhhhhh....hhhhhhh.hhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh.hhhhhh....hhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4o1p D  22 SLEEMLTQAVQEADIEQVRQLLERGADANFQEEEWGWSPLHSAVQMDSEDLVALLLKHGADPCLRKRNGATPFIIAGITGNVRLLQLLLPNVEDVNECDVNGFTAFMEAAVYGRVEALRFLYENGADVNMHRKTKQDQERIRKGGATALMDAAEKGHVGVVTILLHAMKAEVDARDNMGRNALVYALLNPDDGKAKAITRLLLDHGADVNVRGEGSKTPLILAVERKNLDLVQMLLEQEQIEVNDTDREGKTALLLAVELRLEEIAKLLCHRGASTNCGDLVAIARRNYDSDLVKFLRLHKNWKPQSSRWGEALKHLHRIWRPMIGKLKIFIDEEYKIADTAEGGIYLGLYEDQEVAVKRFSEGSTRGQQEVSCLQSSRANDNVVTFYGSESDGSCLHVCLALCEYTLQEHLANHRGDAVPNEEDESARNILSSLFKAIGELHRSGYSHQDLQPQNILIDSKNGTFLADFDKSIKWAEDPQKIKRDLEALGLLVLYVVKKGDISFETLKNQSFEEVIQGSPDEETRDLIHHLFHPGRLSSLLAHPFFWSWESRYRTLRDVGNESDIKTRNQNSRILQLLQPTSFAQWTTKIDSFVMEEMNAYQDTLGDLLKFIRNLGEHINEQKNKKMKSIIGEPSQYFQEKFPDLVMYVYTKLQNTEYMKHFPKTHN 729
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321||     341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561     ||576       586       596       606       616||     632       642||     671       681       691       701       711       721        
                                                                                                                                                                                                                                                                                                                                      322|                                                                                                                                                                                                                                       567|                                         617|                643|                                                                  
                                                                                                                                                                                                                                                                                                                                       333                                                                                                                                                                                                                                        573                                          624                 663
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4O1P)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4O1P)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4O1P)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    25L  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    ANP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Pro B:566 - Gly B:567   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  4o1p
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  A5H025_PIG | A5H025
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  A5H025_PIG | A5H025
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A5H025_PIG | A5H025: 4o1o

(-) Related Entries Specified in the PDB File

4o1o