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(-) Description

Title :  CRYSTAL STRUCTURE OF FABI FROM S. AUREUS IN COMPLEX WITH A NOVEL BENZIMIDAZOLE INHIBITOR
 
Authors :  S. Mehboob, M. E. Johnson, B. D. Santarsiero
Date :  11 Dec 13  (Deposition) - 31 Dec 14  (Release) - 31 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A  (2x)
Biol. Unit 3:  B  (2x)
Keywords :  Rossman Fold, Reductase, Nadph, Reduction, Oxidoreductase- Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Mehboob, L. Truong, B. D. Santarsiero, M. E. Johnson
To Be Published
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADPH]
    ChainsA, B
    EC Number1.3.1.39
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET15B
    Expression System StrainBL21
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentENOYL REDUCTASE
    GeneFABI, SAUSA300_0912
    MutationYES
    Organism ScientificSTAPHYLOCOCCUS AUREUS
    Organism Taxid367830
    StrainUSA300
    SynonymENR

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit AB
Biological Unit 1 (1x)AB
Biological Unit 2 (2x)A 
Biological Unit 3 (2x) B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
11JT2Ligand/Ion1-(4-METHOXY-3-METHYLBENZYL)-5,6,7,8-TETRAHYDRO-1H-NAPHTHO[2,3-D]IMIDAZOLE
2NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
11JT2Ligand/Ion1-(4-METHOXY-3-METHYLBENZYL)-5,6,7,8-TETRAHYDRO-1H-NAPHTHO[2,3-D]IMIDAZOLE
2NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
11JT2Ligand/Ion1-(4-METHOXY-3-METHYLBENZYL)-5,6,7,8-TETRAHYDRO-1H-NAPHTHO[2,3-D]IMIDAZOLE
2NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Biological Unit 3 (2, 4)
No.NameCountTypeFull Name
11JT2Ligand/Ion1-(4-METHOXY-3-METHYLBENZYL)-5,6,7,8-TETRAHYDRO-1H-NAPHTHO[2,3-D]IMIDAZOLE
2NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:97 , TYR A:147 , GLN A:155 , TYR A:157 , SER A:197 , NAP A:302BINDING SITE FOR RESIDUE 1JT A 301
2AC2SOFTWAREGLY A:13 , ILE A:14 , ALA A:15 , SER A:19 , ILE A:20 , ARG A:40 , LYS A:41 , SER A:44 , ILE A:65 , ASP A:66 , VAL A:67 , GLN A:68 , SER A:93 , ILE A:94 , ALA A:95 , ILE A:120 , THR A:145 , THR A:146 , TYR A:147 , LYS A:164 , ALA A:190 , GLY A:191 , PRO A:192 , ILE A:193 , THR A:195 , SER A:197 , 1JT A:301 , HOH A:403 , HOH A:405 , HOH A:440 , HOH A:441BINDING SITE FOR RESIDUE NAP A 302
3AC3SOFTWARELYS B:82 , ALA B:97 , TYR B:147 , VAL B:154 , TYR B:157 , SER B:197 , ILE B:207 , NAP B:302BINDING SITE FOR RESIDUE 1JT B 301
4AC4SOFTWAREGLY B:13 , ILE B:14 , ALA B:15 , SER B:19 , ILE B:20 , ARG B:40 , LYS B:41 , SER B:44 , ILE B:65 , ASP B:66 , VAL B:67 , GLN B:68 , SER B:93 , ILE B:94 , ALA B:95 , ILE B:120 , THR B:145 , THR B:146 , LYS B:164 , ALA B:190 , GLY B:191 , PRO B:192 , ILE B:193 , THR B:195 , SER B:197 , 1JT B:301 , HOH B:403 , HOH B:404 , HOH B:439BINDING SITE FOR RESIDUE NAP B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NZ9)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Arg A:103 -Gly A:104
2Arg B:103 -Gly B:104

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NZ9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NZ9)

(-) Exons   (0, 0)

(no "Exon" information available for 4NZ9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh.........eee....hhhhhhhhhhhhhhhhh...eeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeehhhhh.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhh...hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nz9 A   2 LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIEERAPLKRNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSGFHAIK 256
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251     

Chain B from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee......hhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhh........eeee....hhhhhhhhhhhhhhhhh...eeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeeeeehhhhh......hhhhhhhhhhhhhhhhhhhhhh...eeeeeeee......hhhhh.hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.....eeee..hhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nz9 B   3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIEERAPLKRNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSGFHAIK 256
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252    

   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NZ9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NZ9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NZ9)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4NZ9)

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 Related Entries

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