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(-) Description

Title :  HIV INTEGRASE IN COMPLEX WITH INHIBITOR
 
Authors :  R. Coulombe, L. Fader
Date :  10 Dec 13  (Deposition) - 25 Jun 14  (Release) - 25 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Allosteric Inhibitor, Ncini, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. D. Fader, E. Malenfant, M. Parisien, R. Carson, F. Bilodeau, S. Landry, M. Pesant, C. Brochu, S. Morin, C. Chabot, T. Halmos, Y. Bousquet, M. D. Bailey, S. H. Kawai, R. Coulombe, S. Laplante, A. Jakalian, P. K. Bhardwaj, D. Wernic, P. Schroeder, M. Amad, P. Edwards, M. Garneau, J. Duan, M. Cordingley, R. Bethell, S. W. Mason M. Bos, P. Bonneau, M. A. Poupart, A. M. Faucher, B. Simoneau, C. Fenwick, C. Yoakim, Y. Tsantrizos
Discovery Of Bi 224436, A Noncatalytic Site Integrase Inhibitor (Ncini) Of Hiv-1.
Acs Med Chem Lett V. 5 422 2014
PubMed-ID: 24900852  |  Reference-DOI: 10.1021/ML500002N

(-) Compounds

Molecule 1 - INTEGRASE
    Chains: A, B
    EC Number: 2.7.7.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: INTEGRASE CATALYTIC DOMAIN RESIDUES 1199-1357
    Gene: GAG-POL
    Mutation: YES
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1
    Organism Taxid: 82834
    Synonym: IN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
14BI1Ligand/Ion(2S)-TERT-BUTOXY[4-(4-CHLOROPHENYL)-2-METHYLQUINOLIN-3-YL]ETHANOIC ACID
2CD4Ligand/IonCADMIUM ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:169 , GLU A:170 , HIS A:171 , THR A:174 , GLN B:95 , ALA B:128 , ALA B:129 , TRP B:132BINDING SITE FOR RESIDUE 4BI A 301
2AC2SOFTWARECYS A:65 , ASP A:116 , CD A:303 , HOH A:1037 , HOH A:1055BINDING SITE FOR RESIDUE CD A 302
3AC3SOFTWARECYS A:65 , HIS A:67 , GLU A:92 , CD A:302BINDING SITE FOR RESIDUE CD A 303
4AC4SOFTWAREASP A:131 , CYS B:65 , GLU B:92 , ASP B:116 , CD B:2002 , HOH B:2114BINDING SITE FOR RESIDUE CD B 2001
5AC5SOFTWAREASP A:131 , CYS B:65 , HIS B:67 , GLU B:92 , CD B:2001BINDING SITE FOR RESIDUE CD B 2002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NYF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4NYF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NYF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NYF)

(-) Exons   (0, 0)

(no "Exon" information available for 4NYF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:149
                                                                                                                                                                                     
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeee..eeeeeeee.....eeeeee...hhhhhhhhhhhhhhhh...eee...hhhhhhhhhhhhhhhhh.eee...hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nyf A  56 SSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSATVKAACDWAGIKQEPQSQGVVESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRKGGIGGYSAGERIVDIIATDIQT 210
                                    65        75        85        95       105       115       125       135  ||   151       161       171       181       191       201         
                                                                                                            138|                                                                 
                                                                                                             145                                                                 


Chain B from PDB  Type:PROTEIN  Length:140
                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeee..eeeeeeee.....eeeeee...hhhhhhhhhhhhhhhh...eeee..hhhhhhhhhhhhhhhhh.eeee.......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nyf B  56 SSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFLLKLAGRWPVKTIHTDNGSNFTSATVKAACDWAGIKQEDGIPYNPESMNKELKKIIGQVRDQAEHLKTAVQMAVFIHNKKRYSAGERIVDIIATD 207
                                    65        75        85        95       105       115       125       135       145|      161       171       181     ||197       207
                                                                                                                   145|                                187|             
                                                                                                                    152                                 194
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NYF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NYF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NYF)

(-) Gene Ontology  (45, 45)

Asymmetric/Biological Unit(hide GO term definitions)

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  4nyf
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  POL_HV1LW | P0C6F2
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        POL_HV1LW | P0C6F2: 3lp3 3th9 3vfa 4i8w 4i8z 4mc1 4mc2 4mc6 4mc9 4qgi 5k14

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4NYF)