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(-) Description

Title :  BOND LENGTH ANALYSIS OF THE PQQC Y175F MUTANT STRUCTURE SHOWS EVIDENCE FOR BOUND PQQ IN THE REDUCED FORM
 
Authors :  S. J. Fisher, S. Puehringer
Date :  10 Dec 13  (Deposition) - 04 Mar 15  (Release) - 04 Mar 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.44
Chains :  Asym./Biol. Unit :  A,B
Keywords :  All Helical, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. J. Fisher, S. Puehringer
Bond Length Analysis Of The Pqqc Y175F Mutant Structure Shows Evidence For Bound Pqq In The Reduced Form
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PYRROLOQUINOLINE-QUINONE SYNTHASE
    Chains: A, B
    EC Number: 1.3.3.11
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Gene: PQQC, KPN78578_17810, KPN_01811
    Mutation: YES
    Organism Scientific: KLEBSIELLA PNEUMONIAE SUBSP. PNEUMONIAE
    Organism Taxid: 272620
    Strain: ATCC 700721 / MGH 78578
    Synonym: COENZYME PQQ SYNTHESIS PROTEIN C, PYRROLOQUINOLINE QUINONE BIOSYNTHESIS PROTEIN C

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 14)

Asymmetric/Biological Unit (3, 14)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2GOL10Ligand/IonGLYCEROL
3PQQ2Ligand/IonPYRROLOQUINOLINE QUINONE

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:23 , HIS A:24 , ARG A:50 , TYR A:53 , GLN A:54 , LYS A:60 , HIS A:84 , TYR A:128 , SER A:144 , THR A:146 , ILE A:153 , HIS A:154 , ARG A:157 , PHE A:175 , ARG A:179 , LYS A:214 , CL A:304 , HOH A:437BINDING SITE FOR RESIDUE PQQ A 301
02AC2SOFTWARELYS A:76 , TRP A:77 , ARG A:80 , ARG A:185 , ASP A:186 , HIS A:189 , HOH A:531BINDING SITE FOR RESIDUE GOL A 302
03AC3SOFTWAREARG A:233 , HOH A:661 , TYR B:29 , THR B:226 , HOH B:588BINDING SITE FOR RESIDUE GOL A 303
04AC4SOFTWAREALA A:150 , HIS A:154 , ARG A:179 , PQQ A:301BINDING SITE FOR RESIDUE CL A 304
05AC5SOFTWAREGLY A:20 , ARG A:40 , PHE A:149 , GLN A:152 , HOH A:414 , HOH A:417 , HOH A:466 , HOH A:501 , HOH A:671BINDING SITE FOR RESIDUE GOL A 305
06AC6SOFTWAREARG A:134 , ALA A:135 , CYS A:136 , VAL A:251 , HOH A:452 , HOH A:482 , HOH A:519 , HOH A:547 , HOH A:568 , HOH A:675 , HOH A:677 , HOH B:439 , HOH B:574 , HOH B:682BINDING SITE FOR RESIDUE GOL A 306
07AC7SOFTWARETHR A:6 , SER A:8 , PRO A:9BINDING SITE FOR RESIDUE GOL A 307
08AC8SOFTWARETYR B:23 , HIS B:24 , ARG B:50 , TYR B:53 , GLN B:54 , ILE B:57 , LYS B:60 , HIS B:84 , TYR B:128 , SER B:144 , THR B:146 , ILE B:153 , HIS B:154 , ARG B:157 , PHE B:175 , ARG B:179 , LYS B:214 , CL B:304 , HOH B:412BINDING SITE FOR RESIDUE PQQ B 301
09AC9SOFTWARELYS B:76 , TRP B:77 , GLN B:79 , ARG B:80 , ARG B:185 , ASP B:186 , HIS B:189 , HOH B:621 , HOH B:688BINDING SITE FOR RESIDUE GOL B 302
10BC1SOFTWAREPRO A:28 , TYR A:29 , THR A:226 , ALA A:230 , LEU A:231 , HOH A:606 , ARG B:233 , HOH B:541BINDING SITE FOR RESIDUE GOL B 303
11BC2SOFTWAREALA B:150 , HIS B:154 , ARG B:179 , ALA B:183 , PQQ B:301BINDING SITE FOR RESIDUE CL B 304
12BC3SOFTWAREASN A:130 , ARG A:133 , ARG A:134 , ARG B:133 , ARG B:134BINDING SITE FOR RESIDUE GOL B 305
13BC4SOFTWAREGLN B:138 , GLU B:253 , HIS B:254 , HIS B:255 , HOH B:497 , HOH B:542BINDING SITE FOR RESIDUE GOL B 306
14BC5SOFTWARETYR B:229 , PRO B:234 , ASP B:241 , LYS B:242 , ALA B:243 , TRP B:245 , HOH B:537 , HOH B:655BINDING SITE FOR RESIDUE GOL B 307

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NY7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4NY7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NY7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NY7)

(-) Exons   (0, 0)

(no "Exon" information available for 4NY7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh..hhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ny7 A   2 LITDTLSPQAFEEALRAKGDFYHIHHPYHIAMHNGNATREQIQGWVANRFYYQTTIPLKDAAIMANCPDAQTRRKWVQRILDHDGSHGEDGGIEAWLRLGEAVGLSRDDLLSERHVLPGVRFAVDAYLNFARRACWQEAACSSLTELFAPQIHQSRLDSWPQHYPWIKEEGYFFFRSRLSQANRDVEHGLALAKAYCDSAEKQNRMLEILQFKLDILWSMLDAMTMAYALQRPPYHTVTDKAAWHTTRLVLEHH 255
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251    


Chain B from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh..hhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ny7 B   2 LITDTLSPQAFEEALRAKGDFYHIHHPYHIAMHNGNATREQIQGWVANRFYYQTTIPLKDAAIMANCPDAQTRRKWVQRILDHDGSHGEDGGIEAWLRLGEAVGLSRDDLLSERHVLPGVRFAVDAYLNFARRACWQEAACSSLTELFAPQIHQSRLDSWPQHYPWIKEEGYFFFRSRLSQANRDVEHGLALAKAYCDSAEKQNRMLEILQFKLDILWSMLDAMTMAYALQRPPYHTVTDKAAWHTTRLVLEHH 255
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NY7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NY7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NY7)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/Swiss-Prot
        PQQC_KLEP7 | A6T9H1: 3hlx 3hml 3hnh

(-) Related Entries Specified in the PDB File

3hlx