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(-) Description

Title :  C212A MUTANT OF SYNECHOCOCCUS VKOR
 
Authors :  S. Liu, W. Cheng, R. Fowle Grider, G. Shen, W. Li
Date :  04 Dec 13  (Deposition) - 12 Feb 14  (Release) - 12 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  4.19
Chains :  Asym./Biol. Unit :  A
Keywords :  Four Helix Bundle, Oxidoreductase, Thioredoxin-Like Protein, Membrane (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Liu, W. Cheng, R. Fowle Grider, G. Shen, W. Li
Structures Of An Intramembrane Vitamin K Epoxide Reductase Homolog Reveal Control Mechanisms For Electron Transfer.
Nat Commun V. 5 3110 2014
PubMed-ID: 24477003  |  Reference-DOI: 10.1038/NCOMMS4110

(-) Compounds

Molecule 1 - VKORC1/THIOREDOXIN DOMAIN PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET20B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CYB_2278
    Mutation: YES
    Organism Scientific: SYNECHOCOCCUS SP.
    Organism Taxid: 321332
    Strain: JA-2-3B'A(2-13)

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1U101Ligand/IonUBIQUINONE-10

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:41 , VAL A:59 , LEU A:60 , ALA A:65 , THR A:72 , GLY A:76 , ALA A:110 , MET A:111 , GLU A:115 , MET A:118 , MET A:122 , CYS A:133 , ALA A:136BINDING SITE FOR RESIDUE U10 A 501

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:56 -A:130
2A:231 -A:244

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:54 -Gly A:55
2Tyr A:252 -Pro A:253

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NV6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NV6)

(-) Exons   (0, 0)

(no "Exon" information available for 4NV6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:264
                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhh....ee..eehhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh.eeee...hhhhhhhhhhhhhhhhh..eee..........hhhhhhhh.....eeee..eeee...hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4nv6 A  17 RHSRLILAILAGLGSLLTAYLTYTKLTEQPAAFCTGDGGCDLVLSSRWAEFLGIPTAAVGLLGFLGVLALAVLPDLPLVKRWRWPALFGLVSAMTAFEMYMLYLMVAVLRQFCMYCTTAIILVAGLGLVTVLGHRWLGGKLAFSYILVAFLTLVTTIGVYANQVPPPSPLAVGLAAHLRQIGGTMYGAYWCPHAQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWIINGRTYTGVRSLEALAVASGYPLEEG 282
                                    26        36        46        56        66        76        86    ||  97       107       117       127       137       147      |158       168       178       188       198       208       218       228       238       248       258       268       278    
                                                                                                     91|                                                          154|                                                                                                                              
                                                                                                      93                                                           156
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NV6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NV6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NV6)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  4nv6
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  VKOR_SYNJB | Q2JJF6
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  VKOR_SYNJB | Q2JJF6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        VKOR_SYNJB | Q2JJF6: 3kp8 3kp9 4nv2 4nv5

(-) Related Entries Specified in the PDB File

3kp8
3kp9 THE SAME PROTEIN IN A DIFFERENT ELECTRON TRANSFER STATE
4nsz
4nv2
4nv5