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(-) Description

Title :  CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN SNU13P AND THE PEP DOMAIN OF RSA1
 
Authors :  C. Charron, M. E. Chagot, X. Manival, C. Branlant, B. Charpentier
Date :  04 Dec 13  (Deposition) - 10 Dec 14  (Release) - 10 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Snornp Assembly, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Bizarro, C. Charron, S. Boulon, B. Westman, B. Pradet-Balade, F. Vandermoere, M. E. Chagot, M. Hallais, Y. Ahmad, H. Leonhardt, A. Lamond, X. Manival, C. Branlant, B. Charpentier, C. Verheggen, E. Bertrand
Proteomic And 3D Structure Analyses Highlight The C/D Box Snornp Assembly Mechanism And Its Control
J. Cell Biol. V. 207 463 2014
PubMed-ID: 25404746  |  Reference-DOI: 10.1083/JCB.201404160

(-) Compounds

Molecule 1 - 13 KDA RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneSNU13, YEL026W
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid559292
    StrainATCC 204508 / S288C
    SynonymSMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN 1
 
Molecule 2 - RIBOSOME ASSEMBLY 1 PROTEIN
    ChainsB
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentPEP DOMAIN, UNP RESIDUES 238-290
    GeneRSA1, YPL193W
    Organism CommonBAKER'S YEAST
    Organism ScientificSACCHAROMYCES CEREVISIAE
    Organism Taxid559292
    StrainATCC 204508 / S288C

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:36 , ALA A:37 , ASN A:38 , GLU A:39 , HOH A:305 , HOH A:321 , HOH A:327 , HOH A:351 , HOH A:355 , HOH A:384BINDING SITE FOR RESIDUE SO4 A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NUT)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Phe A:9 -Pro A:10
2Glu A:59 -Pro A:60

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NUT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NUT)

(-) Exons   (0, 0)

(no "Exon" information available for 4NUT)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:122
                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhhhhhh..eeehhhhhhhhhhhh.eeeeeee....hhhhhhhhhhhhhhhh..eeee.hhhhhhhhh.......eeeee.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nut A   4 PNPKAFPLADAALTQQILDVVQQAANLRQLKKGANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALGRACGVSRPVIAASITTNDASAIKTQIYAVKDKIETLL 125
                                    13        23        33        43        53        63        73        83        93       103       113       123  

Chain B from PDB  Type:PROTEIN  Length:27
                                                           
               SCOP domains --------------------------- SCOP domains
               CATH domains --------------------------- CATH domains
               Pfam domains --------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh..hhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------- SAPs(SNPs)
                    PROSITE --------------------------- PROSITE
                 Transcript --------------------------- Transcript
                 4nut B 239 DEDVKKWREERKKMWLLKISNNKQKHM 265
                                   248       258       

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NUT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NUT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NUT)

(-) Gene Ontology  (28, 31)

Asymmetric/Biological Unit(hide GO term definitions)

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  RSA1_YEAST | Q08932
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RSA1_YEAST | Q089322m3f 2mjf
        SNU13_YEAST | P399901zwz 2ale 3jcm 5gan 5gap 5tzs 5wyj 5wyk

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4NUT)