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(-) Description

Title :  CRYSTAL STRUCTURE OF MOUSE N-CADHERIN EC1-2 W2F
 
Authors :  X. Jin
Date :  03 Dec 13  (Deposition) - 24 Sep 14  (Release) - 22 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.12
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Cell Adhesion Molecule, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Vendome, K. Felsovalyi, H. Song, Z. Yang, X. Jin, J. Brasch, O. J. Harrison, G. Ahlsen, F. Bahna, A. Kaczynska, P. S. Katsamba, D. Edmond, W. L. Hubbell, L. Shapiro, B. Honig
Structural And Energetic Determinants Of Adhesive Binding Specificity In Type I Cadherins.
Proc. Natl. Acad. Sci. Usa V. 111 E4175 2014
PubMed-ID: 25253890  |  Reference-DOI: 10.1073/PNAS.1416737111

(-) Compounds

Molecule 1 - CADHERIN-2
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 160-374
    Gene: CDH2
    Mutation: YES
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: NEURAL CADHERIN, N-CADHERIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1CA3Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:11 , ASP A:67 , GLU A:69 , ASP A:103 , HOH A:413 , HOH A:448BINDING SITE FOR RESIDUE CA A 301
2AC2SOFTWAREGLU A:11 , GLU A:69 , ASP A:100 , MET A:101 , ASP A:103 , ASP A:136BINDING SITE FOR RESIDUE CA A 302
3AC3SOFTWAREASN A:102 , ASN A:104 , ASP A:134 , ASP A:136 , ASN A:142 , ASP A:194BINDING SITE FOR RESIDUE CA A 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NUQ)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric Unit
No.Residues
1Gly A:15 -Pro A:16
2Phe A:17 -Pro A:18
3Pro A:46 -Pro A:47
4Ala A:153 -Pro A:154
5Thr A:156 -Pro A:157

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NUQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NUQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4NUQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:215
                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeee........eeeee..hhhhhh..eeeeee...........eee.....eeee..........eeeeeeeeee....eeeeeeeeeeeee.......ee...eeeeeee.......eeee..ee......hhhhh.eeeeeeee........eee.....eeee...........eeeeeeeee.hhhh.....eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nuq A   1 DFVIPPINLPENSRGPFPQELVRIRSDRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVWNGSVPEGSKPGTYVMTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NUQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NUQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NUQ)

(-) Gene Ontology  (61, 61)

Asymmetric Unit(hide GO term definitions)

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  4nuq
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  CADH2_MOUSE | P15116
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CADH2_MOUSE | P15116: 1ncg 1nch 1nci 1ncj 1op4 2qvi 3q2w 4num 4nup

(-) Related Entries Specified in the PDB File

4num 4nup