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Title :   CRYSTAL STRUCTURE OF HUMAN CDK12/CYCLIN K IN COMPLEX WITH ADP-ALUMINUM FLUORIDE

Authors :   C. A. Boesken, L. Farnung, K. Anand, M. Geyer

Date :   29 Nov 13 (Deposition) - 26 Mar 14 (Release) - 01 Oct 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Transcription, Rna Polymerase Ii, Phosphorylation, Transferase- Transcription Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. A. Bosken, L. Farnung, C. Hintermair, M. Merzel Schachter, K. Vogel-Bachmayr, D. Blazek, K. Anand, R. P. Fisher, D. Eick, M. Geyer
The Structure And Substrate Specificity Of Human Cdk12/Cyclin K.
Nat Commun V. 5 3505 2014
PubMed-ID: 24662513 | Reference-DOI: 10.1038/NCOMMS4505

Molecule 1 - CYCLIN-DEPENDENT KINASE 12
	Chains	:	A, C
	EC Number	:	2.7.11.22, 2.7.11.23
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Common	:	FALL ARMYWORM
	Expression System Plasmid	:	PACEBAC1
	Expression System Strain	:	SF21
	Expression System Taxid	:	7108
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	PROTEIN KINASE DOMAIN, RESIDUES 714-1063
	Gene	:	CDK12, CRK7, CRKRS, KIAA0904
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	CDC2-RELATED KINASE, ARGININE/SERINE-RICH, CRKRS, CELL DIVISION CYCLE 2-RELATED PROTEIN KINASE 7, CDC2-RELATED PROTEIN KINASE 7, CELL DIVISION PROTEIN KINASE 12, HCDK12

Molecule 2 - CYCLIN-K
	Chains	:	B, D
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Common	:	FALL ARMYWORM
	Expression System Plasmid	:	PIDK
	Expression System Strain	:	SF21
	Expression System Taxid	:	7108
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	UNP RESIDUES 1-267
	Gene	:	CCNK, CPR4
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 17)

No.	Name	Count	Type	Full Name
1	ADP	2	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	AF3	2	Ligand/Ion	ALUMINUM FLUORIDE
3	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
4	MG	7	Ligand/Ion	MAGNESIUM ION
5	TPO	2	Mod. Amino Acid	PHOSPHOTHREONINE

Biological Unit 1 (4, 4)

No.	Name	Count	Type	Full Name
1	ADP	1	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	AF3	1	Ligand/Ion	ALUMINUM FLUORIDE
3	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
4	MG	-1	Ligand/Ion	MAGNESIUM ION
5	TPO	1	Mod. Amino Acid	PHOSPHOTHREONINE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	ADP	-1	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	AF3	-1	Ligand/Ion	ALUMINUM FLUORIDE
3	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
4	MG	-1	Ligand/Ion	MAGNESIUM ION
5	TPO	-1	Mod. Amino Acid	PHOSPHOTHREONINE

Biological Unit 3 (4, 4)

No.	Name	Count	Type	Full Name
1	ADP	1	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	AF3	1	Ligand/Ion	ALUMINUM FLUORIDE
3	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
4	MG	-1	Ligand/Ion	MAGNESIUM ION
5	TPO	1	Mod. Amino Acid	PHOSPHOTHREONINE

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	ADP	-1	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	AF3	-1	Ligand/Ion	ALUMINUM FLUORIDE
3	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
4	MG	-1	Ligand/Ion	MAGNESIUM ION
5	TPO	-1	Mod. Amino Acid	PHOSPHOTHREONINE

Asymmetric Unit (15, 15)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ILE A:733 , GLU A:735 , GLY A:736 , THR A:737 , ALA A:754 , LYS A:756 , PHE A:813 , GLU A:814 , MET A:816 , ASP A:819 , SER A:863 , ASN A:864 , ASP A:877 , HIS A:1040 , GLU A:1041 , AF3 A:1102 , MG A:1103 , MG A:1104 , HOH A:1202 , HOH A:1206 , HOH A:1216 , HOH A:1262 , HOH A:1263	BINDING SITE FOR RESIDUE ADP A 1101
02	AC2	SOFTWARE	ASP A:859 , LYS A:861 , ASN A:864 , ASP A:877 , ADP A:1101 , MG A:1103 , MG A:1104 , HOH A:1263	BINDING SITE FOR RESIDUE AF3 A 1102
03	AC3	SOFTWARE	ASN A:864 , ASP A:877 , ADP A:1101 , AF3 A:1102 , MG A:1104 , HOH A:1263	BINDING SITE FOR RESIDUE MG A 1103
04	AC4	SOFTWARE	ASP A:877 , ADP A:1101 , AF3 A:1102 , MG A:1103 , HOH A:1201	BINDING SITE FOR RESIDUE MG A 1104
05	AC5	SOFTWARE	HIS A:999	BINDING SITE FOR RESIDUE MG A 1105
06	AC6	SOFTWARE	MET A:821 , LYS A:861 , CYS A:862 , SER A:863 , TYR A:901	BINDING SITE FOR RESIDUE EDO A 1106
07	AC7	SOFTWARE	CYS B:23 , TYR B:25 , TRP B:26	BINDING SITE FOR RESIDUE EDO B 301
08	AC8	SOFTWARE	ILE C:733 , GLU C:735 , GLY C:736 , THR C:737 , VAL C:741 , ALA C:754 , LYS C:756 , PHE C:813 , GLU C:814 , MET C:816 , ASP C:819 , SER C:863 , ASN C:864 , ASP C:877 , HIS C:1040 , AF3 C:1102 , MG C:1103 , MG C:1104 , HOH C:1203 , HOH C:1219 , HOH C:1244 , HOH C:1254 , HOH C:1268	BINDING SITE FOR RESIDUE ADP C 1101
09	AC9	SOFTWARE	ASP C:859 , LYS C:861 , ASN C:864 , ASP C:877 , ADP C:1101 , MG C:1103 , MG C:1104 , HOH C:1258 , HOH C:1259 , HOH C:1268	BINDING SITE FOR RESIDUE AF3 C 1102
10	BC1	SOFTWARE	ASN C:864 , ASP C:877 , ADP C:1101 , AF3 C:1102 , HOH C:1268	BINDING SITE FOR RESIDUE MG C 1103
11	BC2	SOFTWARE	ASP C:877 , ADP C:1101 , AF3 C:1102 , HOH C:1259	BINDING SITE FOR RESIDUE MG C 1104
12	BC3	SOFTWARE	LYS C:776 , ARG C:779 , GLN C:780 , ASP D:154 , LEU D:155 , GLN D:156	BINDING SITE FOR RESIDUE EDO C 1105
13	BC4	SOFTWARE	GLN D:37 , LEU D:41	BINDING SITE FOR RESIDUE MG D 301
14	BC5	SOFTWARE	GLU D:204	BINDING SITE FOR RESIDUE MG D 302
15	BC6	SOFTWARE	GLU B:39 , LYS B:88 , GLN B:89 , HOH B:477 , HIS D:85 , PHE D:90	BINDING SITE FOR RESIDUE EDO D 303

(no "SS Bond" information available for 4NST)

(no "Cis Peptide Bond" information available for 4NST)

(no "SAP(SNP)/Variant" information available for 4NST)

(no "PROSITE Motif" information available for 4NST)

(no "Exon" information available for 4NST)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:323
                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhh.eeeeeeeee....eeeeeee.....eeeeeee.........hhhhhhhhhhhh.........eeeeee......eeeeee...eehhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee..............hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh......hhhhhhh..............hhhhhh...hhhhhhhhhhhh........hhhhhh.hhhhhh.hhhhh...........hhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4nst A  716 ESDWGKRCVDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLIHRSVVNMKEIVTDKQDGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLMEGLEYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYNSEESRPYtNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPSAALDLLDHMLTLDPSKRCTAEQTLQSDFLKDVELSKMAPPDLPHWQDCHELWSKK 1046
                                   725       735       745       755       765       775       785       795  ||   813       823       833       843       853       863       873       883       893       903       913       923       933       943       953       963       973       983       993      1003      1013      1023      1033      1043   
                                                                                                            798|                                                                                   893-TPO                                                                                                                                                     
                                                                                                             807

Chain B from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                       
               SCOP domains d4nstb1 B:20-157 automated matches                                                                                                        d4nstb2 B:158-265 automated matches                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhh......hhhhhh....hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4nst B   20 TKPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQGKQQM  265
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259

Chain C from PDB  Type:PROTEIN  Length:318
                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhh.eeeeeeee......eeeeee.....eeeeeeee........hhhhhhhhhhhh...........eeee...eeeeeee...eehhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee.............hhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh......hhhhhhh..............hhhhhh...hhhhhhhhhhhh........hhhhhhhhhhhhh.hhhhh...........hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                4nst C  717 SDWGKRCVDKFDIIGIIGEGTYGQVYKAKDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLIHRSVVNMKEIVTDKGAFYLVFEYMDHDLMGLLESGLVHFSEDHIKSFMKQLMEGLEYCHKKNFLHRDIKCSNILLNNSGQIKLADFGLARLYNSESRPYtNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPSAALDLLDHMLTLDPSKRCTAEQTLQSDFLKDVELSKMAPPDLPHWQDCHELWSK 1045
                                   726       736       746       756       766       776       786       796|      816       826       836       846       856       866       876       886|    | 897       907       917       927       937       947       957       967       977       987       997      1007      1017      1027      1037        
                                                                                                         796|                                                                            886|    |                                                                                                                                                        
                                                                                                          807                                                                             888    |                                                                                                                                                        
                                                                                                                                                                                               893-TPO

Chain D from PDB  Type:PROTEIN  Length:241
                                                                                                                                                                                                                                                                                  
               SCOP domains d4nstd1 D:21-157 automated matches                                                                                                       d4nstd2 D:158-261 automated matches                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.hhhhhh......hhhhhh....hhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4nst D   21 KPCWYWDKKDLAHTPSQLEGLDPATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFPRYVTGACCLFLAGKVEETPKKCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYSQG  261
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Class: All alpha proteins (14657)

Fold: Cyclin-like (137)

Superfamily: Cyclin-like (137)

Family: automated matches (7)

Protein domain: automated matches (7)

Human (Homo sapiens) [TaxId: 9606] (7)

1a	d4nstb1	B:20-157
1b	d4nstb2	B:158-265
1c	d4nstd1	D:21-157
1d	d4nstd2	D:158-261

(no "CATH Domain" information available for 4NST)

(no "Pfam Domain" information available for 4NST)

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Ligands, Modified Residues, Ions (5, 17)

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