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(-) Description

Title :  CRYSTAL STRUCTURE OF CBARA1 IN THE APO-FORM
 
Authors :  L. Wang, X. Yang, S. Li, Y. Shen
Date :  28 Nov 13  (Deposition) - 26 Feb 14  (Release) - 23 Apr 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Ef-Hand, Calcium Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Wang, X. Yang, S. Li, Z. Wang, Y. Liu, J. Feng, Y. Zhu, Y. Shen
Structural And Mechanistic Insights Into Micu1 Regulation O Mitochondrial Calcium Uptake.
Embo J. V. 33 594 2014
PubMed-ID: 24514027  |  Reference-DOI: 10.1002/EMBJ.201386523

(-) Compounds

Molecule 1 - CALCIUM UPTAKE PROTEIN 1, MITOCHONDRIAL
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 97-476
    Gene: MICU1, CALC, CBARA1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ATOPY-RELATED AUTOANTIGEN CALC, ARA CALC, CALCIUM-BINDING ATOPY-RELATED AUTOANTIGEN 1

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4NSC)

(-) Sites  (0, 0)

(no "Site" information available for 4NSC)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NSC)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu E:139 -Pro E:140

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NSC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NSC)

(-) Exons   (0, 0)

(no "Exon" information available for 4NSC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:310
                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh..hhhhhhhhhh........hhhhhhhhh................................hhhhhhhhhhhhhhhhhhhhhhhh........eehhhhhhhhhhhhhh.hhhhhh.......eehhhhhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhh...hhhhhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.....hhhhhhhhhhh.........hhhhhhhhhhhhhhh...hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nsc A 102 KRSGFRDRKVMEYENRIRAYSTPDKIFRYFATLKAEVFMTPEDFVRSITPNEKQPEHLGLDQYIIKRFDIFYTLGECGLISFSDYIFLTTVLSTPQRNFEIAFKMFDLNGDGEVDMEEFEQVQSIIRSALTTYFFGADLKGKLTIKNFLEFQRKLQHDVLKLEFERHDPVDGRITERQFGGMLLAYSGVQSKKLTAMQRQLKKHFKEGKGLTFQEVENFFTFLKNINDVDTALSFYHMAGASLDKVTMQQVARTVAKVELSDHVCDVVFALFDCDGNGELSNKEFVSIMKQRLMRMGFTRLMQAMWKCAQ 465
                                   111       121       131   ||  148       158       168       194       204       214       224       234       244       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438    || 455       465
                                                           135|                               177|                                                       252|                                                                                                                                                                   443|              
                                                            143                                194                                                        277                                                                                                                                                                    451              


Chain B from PDB  Type:PROTEIN  Length:316
                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhh..........................hhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhh.....eeehhhhhhhhhhhhh........hhhhhhh......eeehhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhh.....hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh....hhhhhhhhhhhhh.hhhhhhhhhhhhhh...hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nsc B 107 RDRKVMEYENRIRAYSTPDKIFRYFATLKVIAEVFMTPEDFVRSITPNEKQPEHLGLDQYIIKRREKFADEGSIFYTLGECGLISFSDYIFLTTVLSTPQRNFEIAFKMFDLNGDGEVDMEEFEQVQSIIRSQTSMGMCSALTTYFFGADLKGKLTIKNFLEFQRKLQHDVLKLEFERHDPVDGRITERQFGGMLLAYSGVQSKKLTAMQRQLKKHFKEGKGLTFQEVENFFTFLKNINDVDTALSFYHMAGASLDKVTMQQVARTVAKVELSDHVCDVVFALFDSNKEFVSIMKQRLMRGFTRLMQAMWKCAQET 467
                                   116       126       136||     151       161       171   ||  190       200       210       220       230       240       250       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416    || 433       443|      461      
                                                        137|                             175|                                                                      258|                                                                                                                                               421|           443|               
                                                         143                              185                                                                       275                                                                                                                                                429            452               


Chain C from PDB  Type:PROTEIN  Length:330
                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh.eee..eee.hhhhhhhhhh..............eee...........hhhhhhh.....hhhhhhhhhhhhh.hhhhhhhhhhh.......eehhhhhhhhhhhhhh.........hhhhhh.......eehhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhh........hhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh...hhhhhhhhhhhhh.......hhhhhhhhhhhhhh........hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4nsc C 107 RDRKVMEYENRIRAYSTPDKIFRYFATLKVIAEVFMTPEDFVRSITPNEKQPEHLGLDQYIIKRFEREKFADEGSIFYTLGECGLISFSDYIFLTTVLSTPQRNFEIAFKMFDLNGDGEVDMEEFEQVQSIIRSQTSMGMRHALTTYFFGADLKGKLTIKNFLEFQRKLQHDVLKLEFERHDPVDGRITERQFGGMLLAYSGVQSKKLTAMQRQLKKHFKEGKGLTFQEVENFFTFLKNINDVDTALSFYHMAGASLDKVTMQQVARTVAKVELSDHVCDVVFALFDCDGNGELSNKEFVSIMKQRLMRGLEKPKDMGFTRLMQAMWKCA 464
                                   116       126       136||     151       161       171    || 188       198       208       218       228       238       248       258 ||    284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464
                                                        137|                              176|                                                                         260|                                                                                                                                                                                           
                                                         143                               184                                                                          277                                                                                                                                                                                           


Chain D from PDB  Type:PROTEIN  Length:326
                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhh.eeee...eeeeehhhhhhhhhh..............eeee....................eehhhhhhhhhhhhhhhhhhhhhhh........eehhhhhhhhhhhhhh........hhhhhh......eehhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.......hhhhhhhhh.........hhhhhhhhhhhhhh.....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nsc D 106 FRDRKVMEYENRIRAYSTPDKIFRYFATLKVISGEAEVFMTPEDFVRSITPNEKQPEHLGLDQYIIKRFDEKFADEGSIFYTLGECGLISFSDYIFLTTVLSTPQRNFEIAFKMFDLNGDGEVDMEEFEQVQSIIRSQTSMGSALTTYFFGADLKGKLTIKNFLEFQRKLQHDVLKLEFERHDPVDGRITERQFGGMLLAYSGVQSKKLTAMQRQLKKHFKEGKGLTFQEVENFFTFLKNINDVDTALSFYHMAGASLDKVTMQQVARTVAKVELSDHVCDVVFALFDCDGNGELSNKEFVSIMKQRLMRGLTRLMQAMWKCAQET 467
                                   115       125       135  ||   147       157       167       177|      195       205       215       225       235       245       255 ||    283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443 ||    461      
                                                          138|                                 177|                                                                    257|                                                                                                                                                                      445|             
                                                           141                                  186                                                                     276                                                                                                                                                                       454             


Chain E from PDB  Type:PROTEIN  Length:330
                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee...eeeeeehhhhhhhhhh..............eeee............hhhhh......eehhhhhhhhhhhh.hhhhhhhhhhh.......eehhhhhhhhhhhhhh..hhhhhhh.......eehhhhhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhh...hhhhhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh...hhhhhhhhhhhhh.......hhhhhhhhhhhhhhh...hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4nsc E 103 RSGFRDRKVMEYENRIRAYSTPDKIFRYFATLKVISEPGEAEVFMTPEDFVRSITPNEKQPEHLGLDQYIIKRFDQEREKFADEGSIFYTLGECGLISFSDYIFLTTVLSTPQRNFEIAFKMFDLNGDGEVDMEEFEQVQSIIRSQSALTTYFFGADLKGKLTIKNFLEFQRKLQHDVLKLEFERHDPVDGRITERQFGGMLLAYSGVQSKKLTAMQRQLKKHFKEGKGLTFQEVENFFTFLKNINDVDTALSFYHMAGASLDKVTMQQVARTVAKVELSDHVCDVVFALFDCDGNGELSNKEFVSIMKQRLMRGLFTRLMQAMWKCAQE 466
                                   112       122       132       142       152       162       172    || 187       197       207       217       227       237       247     ||279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439     ||456       466
                                                                                                    177|                                                                   253|                                                                                                                                                                      445|             
                                                                                                     183                                                                    276                                                                                                                                                                       453             


Chain F from PDB  Type:PROTEIN  Length:310
                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee..eeeehhhhhhhhhh..............eee........................eehhhhhhhhhhhh.hhhhhhhhhhh.......eehhhhhhhhhhhhh.....hhhhhh.......eehhhhhhhhhhhhhhhhhhhhhh..hhh.eehhhhhhhhhhh...hhhhhhhhhhhhhhhhh.....eehhhhhhhhhhh.hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh...hhhhhhhhhhh.........hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nsc F 103 RSGFRDRKVMEYENRIRAYSTPDKIFRYFATLKVIAEVFMTPEDFVRSITPNEKQPEHLGLDQYIIKRFSQEREKFADEGSIFYTLGECGLISFSDYIFLTTVLSTPQRNFEIAFKMFDLNGDGEVDMEEFEQVQSIIRSQTSALTTYFFGADLKGKLTIKNFLEFQRKLQHDVLKLEFERHDPVDGRITERQFGGMLLAYSGVQSKKLTAMQRQLKKHFKEGKGLTFQEVENFFTFLKNINDVDTALSFYHMAGASLDKVTMQQVARTVAKVELSDHVCDVVFALFDCDGNGELSNKEFVSIMKQRLMR 443
                                   112       122       132    || 147       157       167       182       192       202       212       222       232       242       252 ||    283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443
                                                            137|                              176|                                                                     254|                                                                                                                                                                       
                                                             143                               182                                                                      276
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NSC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NSC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NSC)

(-) Gene Ontology  (23, 23)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Glu E:139 - Pro E:140   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        MICU1_HUMAN | Q9BPX6: 4nsd

(-) Related Entries Specified in the PDB File

4nsd