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(-) Description

Title :  CRYSTAL STRUCTURE OF NON-EDITED HUMAN NEIL1
 
Authors :  A. Prakash, S. Doublie
Date :  27 Nov 13  (Deposition) - 01 Jan 14  (Release) - 12 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym./Biol. Unit :  A
Keywords :  Zincless Finger Domain, Dna Glycosylase, Helix Two-Turns Helix Motif, Hydrolase, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Prakash, B. L. Carroll, J. B. Sweasy, S. S. Wallace, S. Doublie
Genome And Cancer Single Nucleotide Polymorphisms Of The Human Neil1 Dna Glycosylase: Activity, Structure, And The Effect Of Editing.
Dna Repair V. 14 17 2014
PubMed-ID: 24382305  |  Reference-DOI: 10.1016/J.DNAREP.2013.12.003

(-) Compounds

Molecule 1 - ENDONUCLEASE 8-LIKE 1
    Chains: A
    EC Number: 3.2.2.-, 4.2.99.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET30A
    Expression System Strain: ROSETTA2(DE3)PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 2-290
    Gene: ENDONUCLEASE VIII (NEI) 1, NEIL1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: DNA GLYCOSYLASE/AP LYASE NEIL1, DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE NEIL1, ENDONUCLEASE VIII-LIKE 1, FPG1, NEI HOMOLOG 1, NEH1, NEI-LIKE PROTEIN 1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO A:2 , ARG A:78 , GLY A:80 , HOH A:2128BINDING SITE FOR RESIDUE TRS A 2000

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4NRV)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gln A:67 -Pro A:68

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4NRV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4NRV)

(-) Exons   (0, 0)

(no "Exon" information available for 4NRV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:283
                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh...eeee.ee...........eeeeeeeeeeee..eeeeeeee..........eeeeee.....eeeeee.hhh...eeeeee.......eeeeee......eeee..............hhhhhhhhhhhh..hhhhhhhhhhhh.........hhhhhhhhhhhh......hhhhhhhhhh..hhhhhhhhh....hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh........eeee.....eeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4nrv A   2 PEGPELHLASQFVNEACRALVFGGCVEKSSVSRNPEVPFESSAYRISASARGKELRLILSPLPGAQPQQEPLALVFRFGMSGSFQLVPREELPRHAHLRFYTAPPGPRLALCFVDIRRFGRWDLGGKWQPGRGPCVLQEYQQFRESVLRNLADKAFDRPICEALLDQRFFNGIGNYLRAEILYRLKIPPFEKARSVLEALQELTLSQKIRTKLQNPDLLELCHSVPKEVVQLGGKGYGSESGEEDFAAFRAWLRCYGMPGMSSLQDRHGRTIWFQGDPGPLAP 290
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201||     217       227       237       247       257       267       277       287   
                                                                                                                                                                                                                                  202|                                                                                 
                                                                                                                                                                                                                                   209
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4NRV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4NRV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4NRV)

(-) Gene Ontology  (26, 26)

Asymmetric/Biological Unit(hide GO term definitions)

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  4nrv
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  NEIL1_HUMAN | Q96FI4
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  4.2.99.18
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NEIL1_HUMAN | Q96FI4: 1tdh 5itq 5itr 5itt 5itu 5itx 5ity

(-) Related Entries Specified in the PDB File

4nrw